MXO03776.5prime Sequence
655 bp (605 high quality bases) assembled on 2007-07-18
> MXO03776.5prime
CAGTCGACATGTTGAAGCTTAACCGTGTTCGCCATCTGCGAACGACGTAC
AAGCGCTGTTTGTCCGGCCAGTCGCAGCTGCAGCTGAATAGTACGGACGC
ACAGCCGGCATATCCGGAGATTCAGGATCTGTCCTTCAAGGCGCGCAAGC
AGAAGGATGCGGCCAACTGGCACGAGGAAATCCGGCAGGTGCCGACGGTG
GAGGAGAAGATGATCAAGATCAATATGCCCCGCTATTACGGCTTCAAGGT
GGTCGACTTCAACGACTCGAAAATCCCCTACAATGCACTGCCGCTCACGC
AACATTATACGCGCACAGTGCTCGAGGATTTGCCATCTGAAACGGATAAG
AAGGCACAGGCTAAGGACTCCGAGCAGGAGCAGGAGCTGCCGAGCGTGGA
TGGTCTTTTCAAGGCGGCTCGCGGGGATGTTATTGATGCCCTCGAGTTTG
CCCACGACTACTACAAGCATCTGGAAAAGCAACACAACTCTGCCGAATCG
AACCCCGTTGAACGTGAGCGCATCCTAACGCAGATCATTGTAGAACAGCT
GAACAGAGCTCTGCTGCAGTCGCTCAGCGAGGAGTACAAGCACCTGGATG
AGCTCGATGTCGACTACAATCCACGCCACGAAGCGTTCTGGGCCGTTGGC
GGCGT
MXO03776.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:51:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8470-PA | 1674 | mRpS30-RA | 1..647 | 9..655 | 3185 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS30-RB | 2078 | CG8470-RB | 125..772 | 8..655 | 3210 | 99.7 | Plus |
| mRpS30-RA | 1829 | CG8470-RA | 125..772 | 8..655 | 3210 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15786171..15786630 | 8..467 | 2270 | 99.6 | Plus |
| X | 23542271 | X | 15786794..15786982 | 467..655 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:02:27 has no hits.
MXO03776.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:51:06 Download gff for
MXO03776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8470-PA | 1..647 | 9..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:57 Download gff for
MXO03776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS30-RA | 119..772 | 1..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:30 Download gff for
MXO03776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS30-RA | 119..772 | 1..655 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:30 Download gff for
MXO03776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15786165..15786629 | 1..466 | 98 | -> | Plus |
| X | 15786794..15786982 | 467..655 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:57 Download gff for
MXO03776.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15680198..15680662 | 1..466 | 98 | -> | Plus |
| arm_X | 15680827..15681015 | 467..655 | 100 | | Plus |
