MXO03778.5prime Sequence
816 bp (806 high quality bases) assembled on 2007-07-18
> MXO03778.5prime
CAGTCGACATGAAGTCGGTTATTATTCTCTTAGCCCTGGTGGCTTTCTGC
CACGCAGCACCTCTGGATGTCAAGGAGTCTACCTCTGAGGAGCTCTCTAG
GCCCAGTCCCATCAGCCCCGATGTGCTCGTTGATCCCAAGCCCACCGCCA
AGGTAGTCTTGCTGAAGGATGCTCCCGTCCTGAATCGCCAGAGGCGTAAT
GAACCCAAGAAGCCCGACAGCGTGGAGGCCCACGAACAGCTGCATCACTC
GCAGCCGGCCGTTCCTATTCATGACCAGAAGCCTTCTCCGGCTGGGCCAC
AGGACCACAAGCGCAAGAGGGAAGCTCACCACGAGGAGGGTCACCATGGT
GACGATGCAGTGCCCCAGAAGGAGGAAGTGAAGCAAGCTCCCGAGGACCA
TGACGCCAAGAAGGAAAAGAGAGAGGCTCACCATGAGGAGGGTCACCAAG
ACCATGAGGCTCCTCATAAGGAGGAAGTGAAGCAGGCCCCCGAAGCTCAT
GATGCCAAAAGGGAAAAGCGAGAGGCTCACCACGAGGAAGGCCACCATGG
TGATGATGCAGCTCCACATAAGGAGGAAGTGAAGCAGGCTCCCGAAACAC
ATGAGGACAAGAAGGAAAAGAGGGAAGCTCACCACGAGGAGGGCCACAAG
GATGAGGCAGGTGATCGTCCTCAGGTGGAGGATCTTTCGCTGCCCCATGC
CCTGCCCGCTGTGGCCCACACCGCCGAGCTGCCCAAGAAGCAGGAAAAGC
GCGAGACTGTGGAGAAACCCGACAGCGTGAAGGCCCGTGAGTCGCTCCAG
CACAATCCCCAGCGAT
MXO03778.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:51:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6409-PA | 1083 | CG6409-RA | 1..808 | 9..816 | 4040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6409-RB | 1544 | CG6409-RB | 368..1176 | 8..816 | 4045 | 100 | Plus |
| CG6409-RA | 1212 | CG6409-RA | 36..844 | 8..816 | 4045 | 100 | Plus |
| CG6409-RB | 1544 | CG6409-RB | 675..905 | 417..647 | 465 | 80.8 | Plus |
| CG6409-RB | 1544 | CG6409-RB | 777..1007 | 315..545 | 465 | 80.8 | Plus |
| CG6409-RA | 1212 | CG6409-RA | 343..573 | 417..647 | 465 | 80.8 | Plus |
| CG6409-RA | 1212 | CG6409-RA | 445..675 | 315..545 | 465 | 80.8 | Plus |
| CG6409-RB | 1544 | CG6409-RB | 684..806 | 525..647 | 345 | 86.3 | Plus |
| CG6409-RB | 1544 | CG6409-RB | 885..1007 | 324..446 | 345 | 86.3 | Plus |
| CG6409-RA | 1212 | CG6409-RA | 352..474 | 525..647 | 345 | 86.3 | Plus |
| CG6409-RA | 1212 | CG6409-RA | 553..675 | 324..446 | 345 | 86.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10881067..10881862 | 816..21 | 3980 | 100 | Minus |
| 3L | 28110227 | 3L | 10881236..10881466 | 545..315 | 410 | 80.3 | Minus |
| 3L | 28110227 | 3L | 10881338..10881568 | 647..417 | 410 | 80.3 | Minus |
| 3L | 28110227 | 3L | 10881236..10881358 | 446..324 | 345 | 85.4 | Minus |
| 3L | 28110227 | 3L | 10881437..10881559 | 647..525 | 345 | 85.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:44:40 has no hits.
MXO03778.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:51:17 Download gff for
MXO03778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6409-PA | 1..808 | 9..816 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:41 Download gff for
MXO03778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6409-RA | 29..844 | 1..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:47 Download gff for
MXO03778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6409-RA | 29..844 | 1..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:47 Download gff for
MXO03778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10881067..10881862 | 21..816 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:41 Download gff for
MXO03778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10874167..10874962 | 21..816 | 100 | <- | Minus |
