MXO03779.5prime Sequence
814 bp (756 high quality bases) assembled on 2007-07-18
> MXO03779.5prime
CAGTCGACATGAAAATCGAGTGGGCACCACTGCGGGTTCCTCTGGAACGC
CGACTGCAGATACTGGTCACGGCCTTTTTCACCTCCATGCTGCTGATACT
ATTGTCAGTTTCCTTCCTTTTGGTAGCTGGATCACTGATCTACGGAGGTC
TTTTGGTGCGTAGTCTGATGGTAACTTACTTGGCCTACGTCTTTGTGCAC
CACAAGAAAACCCAATCCGTTGTGGATGGCAATGGCTGGATGATAACACG
CACCAACCTTTTGCATCGCCACTATCGTGATTACTTTCCCGTGGAGCTGG
TGAAAACAGCCGAACTGCCAGCTACTAAGAACTACATCTTGGCCAGCTTT
CCCCACGGAATTCTGGGCACAGGCATTGGCATTAACATGGGCTTGGAAAT
CTCCAAGTGGCTGGAGCTATTCCCCCAAGTGCGTCCCAAACTGGGCACTC
TGGATCAGCATTTCCATGTTCCGTTCATGCGTGAGGTCCTCCGCTGCTGG
GGTCTGGTGTCAGTGTCCAAAGAGGCGCTGATCCGTATGCTCAGCAAGTC
AAATGATCCCAAGCACAAGGATAATCGGGATGGTTTCACCTCCAATGCGG
TGGCCATTCTGGTTGGCGGTGCCCAGGAAGCCATGGACTCTCATCCTGGG
CAGTACATTTTAACCTTGAAGAATAGGAAAGGCTTCGTGCGAATGGCCAT
TAGAACGGGCTCATCGATTGTTCCTTCATTTTCCTTTGGAGAGGTGGACA
TTTTCGATCAGGTGGCAAATCCCCCCAACTCGCTGCTCCGACGGTTTCAG
GACTTTGTCAAGAA
MXO03779.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:51:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1942-PA | 1059 | CG1942-RA | 1..806 | 9..814 | 4030 | 100 | Plus |
| CG1946-PA | 681 | CG1946-RA | 154..219 | 540..605 | 255 | 95.4 | Plus |
| CG1941-PA | 1059 | CG1941-RA | 541..620 | 549..628 | 200 | 90 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1942-RA | 1305 | CG1942-RA | 182..990 | 6..814 | 4045 | 100 | Plus |
| CG1941-RD | 1203 | CG1941-RD | 235..868 | 180..813 | 950 | 77.2 | Plus |
| CG1941-RC | 1678 | CG1941-RC | 710..1343 | 180..813 | 950 | 77.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7713304..7713646 | 367..709 | 1715 | 100 | Plus |
| 2R | 25286936 | 2R | 7713106..7713238 | 235..367 | 665 | 100 | Plus |
| 2R | 25286936 | 2R | 7712759..7712890 | 6..137 | 660 | 100 | Plus |
| 2R | 25286936 | 2R | 7713703..7713808 | 709..814 | 530 | 100 | Plus |
| 2R | 25286936 | 2R | 7712950..7713048 | 137..235 | 495 | 100 | Plus |
| 2R | 25286936 | 2R | 7715890..7716199 | 379..688 | 485 | 77.1 | Plus |
| 2R | 25286936 | 2R | 7711079..7711410 | 372..703 | 430 | 75.3 | Plus |
| 2R | 25286936 | 2R | 7711481..7711580 | 714..813 | 230 | 82 | Plus |
| 2R | 25286936 | 2R | 7710879..7710980 | 266..367 | 225 | 81.4 | Plus |
| 2R | 25286936 | 2R | 7716283..7716383 | 714..814 | 190 | 79.2 | Plus |
Blast to na_te.dros performed 2014-11-28 22:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 2830..2879 | 702..653 | 115 | 70 | Minus |
MXO03779.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:51:22 Download gff for
MXO03779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1942-PA | 1..804 | 9..812 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:14 Download gff for
MXO03779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1942-RA | 177..990 | 1..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:59 Download gff for
MXO03779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1942-RA | 177..990 | 1..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:59 Download gff for
MXO03779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7712754..7712890 | 1..137 | 98 | -> | Plus |
| 2R | 7712951..7713048 | 138..235 | 100 | -> | Plus |
| 2R | 7713107..7713238 | 236..367 | 100 | -> | Plus |
| 2R | 7713305..7713646 | 368..709 | 100 | -> | Plus |
| 2R | 7713704..7713808 | 710..814 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:14 Download gff for
MXO03779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3600259..3600395 | 1..137 | 98 | -> | Plus |
| arm_2R | 3600456..3600553 | 138..235 | 100 | -> | Plus |
| arm_2R | 3600612..3600743 | 236..367 | 100 | -> | Plus |
| arm_2R | 3600810..3601151 | 368..709 | 100 | -> | Plus |
| arm_2R | 3601209..3601313 | 710..814 | 100 | | Plus |
