MXO03782.5prime Sequence
761 bp (759 high quality bases) assembled on 2007-07-18
> MXO03782.5prime
CAGTCGACATGGCCCAAAAGAAAGCCGTCACCGTCAAAGGAAAAAAAGCT
ACGAATGGAGAGGAAAAGCCTTTGGCCAAACGGGTAACCAAGTCCACAAA
GGTACAGGAAGAGGAGACAGTAGTCCCCCAATCGCCTTCCAAAAAATCCA
GAAAACAGCCTGTTAAAGAAGTGCCGCAGTTCAGTGAAGAGGACGAGTCT
GATGTGGAGGAGCAAAATGACGAGCAGCCAGGGGACGACAGCGACTTTGA
GACCGAAGAGGCAGCGGGCTTAATTGACGACGAGGCTGAGGAAGATGAAG
AGTACAATAGTGACGATGAGGAAGATGATGATGACGATGAGTTGGAGCCT
GGTGAGGTTTCCAAAAGTGAAGGCGCGGATGAGGTAGATGAATCCGATGA
TGATGAAGAAGCGCCTGTAGAGAAGCCAGTTTCCAAGAAATCAGAAAAAG
CCAACTCTGAAAAGTCCGAAGAAAATAGAGGAATTCCAAAAGTAAAGGTT
GGCAAGATTCCGCTGGGAACGCCAAAAAACCAGATCGTTTTTGTCACAAA
CCTACCAAACGAGTATCTCCACAAGGACTTGGTCGCATTGTTCGCCAAGT
TCGGACGACTTTCCGCTTTGCAGCGTTTCACTAATTTGAATGGCAATAAA
TCAGTTCTCATTGCCTTTGATACGTCAACTGGAGCAGAAGCTGTTCTGCA
GGCTAAGCCTAAAGCGTTAACCCTTGGAGACAATGTTTTGTCTGTGTCCC
AACCGAGAAAT
MXO03782.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:51:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2050-PA | 1629 | mod-RA | 1..753 | 9..761 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod-RC | 1954 | CG2050-RC | 116..868 | 9..761 | 3765 | 100 | Plus |
| mod-RA | 2287 | CG2050-RA | 449..1201 | 9..761 | 3765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 32053240..32053555 | 246..561 | 1565 | 99.7 | Plus |
| 3R | 32079331 | 3R | 32052735..32052977 | 9..251 | 1215 | 100 | Plus |
| 3R | 32079331 | 3R | 32053622..32053822 | 561..761 | 1005 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:58:37 has no hits.
MXO03782.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:51:37 Download gff for
MXO03782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2050-PA | 1..753 | 9..761 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:49 Download gff for
MXO03782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod-RA | 441..1201 | 1..761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:46 Download gff for
MXO03782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod-RA | 441..1201 | 1..761 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:46 Download gff for
MXO03782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 32052727..32052977 | 1..251 | 98 | -> | Plus |
| 3R | 32053246..32053555 | 252..561 | 100 | -> | Plus |
| 3R | 32053623..32053822 | 562..761 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:49 Download gff for
MXO03782.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27878449..27878699 | 1..251 | 98 | -> | Plus |
| arm_3R | 27878968..27879277 | 252..561 | 100 | -> | Plus |
| arm_3R | 27879345..27879544 | 562..761 | 100 | | Plus |
