MXO03783.5prime Sequence
877 bp (867 high quality bases) assembled on 2007-07-18
> MXO03783.5prime
CAGTCGACATGGCCGCTGCAAGTGGACAACTGTCCAAGAATGAGCTAAAG
CGTCGCCTGAAGGCCGAGCAAAAGGCCAAGGAGAAGGCTGAGAAGGCGGC
CGCTGCGCCGGCGGAAAATACTGCTGGCAAGAAGAAGAGCAGTGCCGCCG
AGGAGGAGGAGATCTCGCCGAATGAATACTTTAAGCTGCGCTCCGCCGCC
GTTCAGGAGCTGAAACGTTCACCCGCAACGGATCCCTATCCACACAAGTT
CCATGTGAGTAGCTCGCTGGAAGACTTCATTGCCAAGTACGAGAACAGCC
TCAAGGAGGGCGAGACCCTGGAGAATGTCAAACTGAGCGTGGCTGGGCGC
GTGCATGCCATACGCGAGTCGGGCGCCAAGCTCATTTTCTACGATCTGCG
CGGCGAGGGCGTCAAGGTGCAGGTGATGGCCAGCGCTAAGTCCTACAAGT
CGGAGGCGGATTTCGAAATCGATACGTCCAAATTGCGACGTGGTGATATC
ATCGGCGTTGTCGGACATCCCGGCAAAACCAAGAAGGGTGAACTGTCCGT
TATGCCCAGCGAGATCAAGCTGCTATCGCCCTGTCTACACATGCTGCCCC
ATCTGCATTTCGGGTTGAAGGACAAGGAGACGCGCTACCGCCAGCGCTAT
CTTGATCTCATTCTCAACAACAATGTGCGAGAGAAATTCCAGATCCGTGC
CAAGATCATCTCGTACGTGCGTCAGTTCCTGGATCGTCTGGGTTTCCTGG
AGATCGAGACGCCCATGATGAACATGATCGCCGGTGGAGCCACTGCCAAG
CCCTTCGTGACGCATCACAATGACCTCAAGATGGATCTGTTCATGCGCAT
TGCTCCGGAGCTGTATCACAAGATGCT
MXO03783.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:51:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12141-PA | 1725 | Aats-lys-RA | 1..869 | 9..877 | 4320 | 99.8 | Plus |
| CG12141-PB | 1824 | Aats-lys-RB | 132..968 | 41..877 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-lys-RA | 1969 | CG12141-RA | 134..1003 | 8..877 | 4335 | 99.9 | Plus |
| Aats-lys-RC | 2160 | CG12141-RC | 358..1194 | 41..877 | 4185 | 100 | Plus |
| Aats-lys-RB | 2223 | CG12141-RB | 421..1257 | 41..877 | 4185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9607629..9608292 | 704..41 | 3320 | 100 | Minus |
| X | 23542271 | X | 9607395..9607569 | 877..703 | 875 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:31:55 has no hits.
MXO03783.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:51:42 Download gff for
MXO03783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12141-PA | 1..869 | 9..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:22 Download gff for
MXO03783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-lys-RA | 128..1003 | 1..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:07 Download gff for
MXO03783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-lys-RA | 128..1003 | 1..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:07 Download gff for
MXO03783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9607395..9607567 | 705..877 | 100 | <- | Minus |
| X | 9607629..9608292 | 41..704 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:22 Download gff for
MXO03783.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9501428..9501600 | 705..877 | 100 | <- | Minus |
| arm_X | 9501662..9502325 | 41..704 | 100 | <- | Minus |
