MXO03790.5prime Sequence
882 bp (798 high quality bases) assembled on 2007-07-18
> MXO03790.5prime
CAGTCGACATGGCTGATACTCCGGATGACTATTGGTGTCGCATCCCGGAG
CTACTCGACTTGCCCCTGGAGCAGCGAAAATCGCTGTCCATACCCAAGGA
ACTGGATAACGACGAACTGGTCTACAGCAAATGTTATACCTACGGAGTCA
ACTGGACGCAGCTCCTTGAATCGGGGGAAGAGGATGACCTGACGACCATG
GAGCCGAATGCCAGTTGGCCACTGATCAAGTGCCCCCAGGGATGGGAGTA
CAACACAAGCGTCGTCTGGTCCTCCATTGTGATTGATTTCGATCTAGTGT
GCGATCAGGATATTTATCCTACGATTGGATTGGCTGCTCTTAATACTGGC
GGTCCAGTGGGAGTCTATCTTTTCGGATTACTCTTTGATCGTGGCGGACG
AAGGCTCTCCTATTTCGTCTGTTTGGCCACTTTGCTGGCTGGCAGCCTAA
TGACTTCGCTGAGCAAGGATTTTTGGACTTGGGCCGGCAGTCGAGTCATC
GTAGGACTGACCATTCCAGCTGTCTACCAGATACCATTTATAATATCTCT
GGAACTGGTGGGTGAAAACTATCGATCCTTCGTGACTGTGATGACGTGCA
CCTTTTACACTTCGGGCATCATGCTCCTGTCCGGCGTCACTTATCTGGAG
CGGGATTGGGTGCGCCTCTCCTACATCACATCCCTGCCGTTTTACGCCTA
TTTCCTGTACATGTTCGTCATGCCGGAATCACCGAGATGGCTTTTGATGC
GCGGTCGCCTGGAGGAGGCTCTCAAGATTCTGGAGCGCATGGCAAAGGTC
AATGGCAGAGAGTTTCCCGAGGCTGTGCATCTCAAGCTGGAGGCTCAGAT
ACGACGGGATAAGCTCAAGAAGCAAAAGAAAA
MXO03790.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:51:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9317-PB | 1803 | CG9317-RB | 1..874 | 9..882 | 4295 | 99.6 | Plus |
| CG9317-PA | 2025 | CG9317-RA | 223..1096 | 9..882 | 4295 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9317-RC | 2294 | CG9317-RC | 253..1126 | 9..882 | 4325 | 99.7 | Plus |
| CG9317-RA | 2523 | CG9317-RA | 253..1126 | 9..882 | 4325 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20728685..20729020 | 882..547 | 1680 | 100 | Minus |
| 2L | 23513712 | 2L | 20729076..20729334 | 546..288 | 1250 | 98.8 | Minus |
| 2L | 23513712 | 2L | 20729483..20729666 | 287..104 | 920 | 100 | Minus |
| 2L | 23513712 | 2L | 20729876..20729972 | 105..9 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:33:27 has no hits.
MXO03790.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:51:58 Download gff for
MXO03790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-PA | 214..1092 | 1..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:27 Download gff for
MXO03790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 244..1122 | 1..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:30 Download gff for
MXO03790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9317-RA | 244..1122 | 1..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:30 Download gff for
MXO03790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20728689..20729020 | 547..878 | 100 | <- | Minus |
| 2L | 20729076..20729334 | 288..546 | 98 | <- | Minus |
| 2L | 20729483..20729665 | 105..287 | 100 | <- | Minus |
| 2L | 20729877..20729981 | 1..104 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:27 Download gff for
MXO03790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20728689..20729020 | 547..878 | 100 | <- | Minus |
| arm_2L | 20729076..20729334 | 288..546 | 98 | <- | Minus |
| arm_2L | 20729483..20729665 | 105..287 | 100 | <- | Minus |
| arm_2L | 20729877..20729981 | 1..104 | 96 | | Minus |
