MXO03793.5prime Sequence
778 bp (777 high quality bases) assembled on 2007-07-18
> MXO03793.5prime
CAGTCGACATGGGCAAAAAGAACAAGGGCGGCGCCCCCAACCTGGGCCGC
CAGTTGATCAAGGATCGTTTCGGACACACTCAGCGCCGCAAGGTGGACAA
CGACACGATGCTGCACACCACCGAGCTGCAGGATGGCTACGACTGGGGCC
GCCTCAACCTGTCCTCTGTCACTGAGGAGTCGTCGTTCCAGGCCTTCCTG
CGCACGGCTGAGCTGGCCGGCACTGAGTTCCAGGCCGAGAAGCTGAACAT
CACGTTCGTGAACCCCAAGCAGCGCGTTGGACTGCTGAGCAAGACGCAGG
AGCAGCGCATGCACCAGAAGCACGACGAGCACCGTGACCAGCTCAAGATC
CCGCGGCGGCCCAAGTGGACCAAGGAGACGAGCGCCGAGGAGCTAGTGCG
AGCCGAGAACGAGGCATTTCTCGACTGGCGCCGCGACCTGGCGCTGCTGC
AGGAGGACGAGGAGATCTTGATGACTCCGTATGAGAAGAACCTGGAGTTC
TGGCGGCAGCTGTGGCGCGTAGTGGAGCGATCTGACGTCGTTGTGCAGAT
CGTAGACGCCCGTAATCCGCTGCTGTTCCGCAGCGCCGACCTTGAGCGCT
ACGTAAAGGAGGTGGAACCTAGCAAGATGAACATGATCCTGGTAAACAAG
TCGGACCTGCTCACTGAGGAACAGCGTCGCCACTGGGCGGAGTACTTTGA
CAGCGAGGGTATTCGCACGGCCTTCTACTCGGCCACGCTGGTAGAGGAGG
AGTTGAAGCGGGAGGCGGAGGAGTGCCT
MXO03793.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:52:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14788-PA | 1821 | l(1)G0431-RA | 1..770 | 9..778 | 3850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ns3-RB | 2176 | CG14788-RB | 105..875 | 8..778 | 3855 | 100 | Plus |
| Ns3-RA | 2040 | CG14788-RA | 105..875 | 8..778 | 3855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1463272..1463940 | 778..110 | 3345 | 100 | Minus |
| X | 23542271 | X | 1464014..1464116 | 110..8 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:23:32 has no hits.
MXO03793.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:52:07 Download gff for
MXO03793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14788-PA | 1..770 | 9..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:54 Download gff for
MXO03793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns3-RA | 99..875 | 1..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:09 Download gff for
MXO03793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ns3-RA | 99..875 | 1..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:09 Download gff for
MXO03793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1464014..1464122 | 1..110 | 97 | | Minus |
| X | 1463272..1463939 | 111..778 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:54 Download gff for
MXO03793.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1357305..1357972 | 111..778 | 100 | <- | Minus |
| arm_X | 1358047..1358155 | 1..110 | 97 | | Minus |
