MXO03794.5prime Sequence
856 bp (767 high quality bases) assembled on 2007-07-18
> MXO03794.5prime
CAGTCGACATGAGCCAGAACCAACTGAGTACGGAGCAACTGCTCTTCGAG
GAGAAGCCGCTGTACGTGCCCCCATTGTCAGAGTTGCAGAACGTTATACA
GGGTGCCCTGGCGGCCAACTTCGCCAATGTGAATGTCAGTGTGGGCCCTT
GTCCGGATCTGAAGGCCAAGCAGTTCGGCCTGGTGGAGAGTGGACTGGGC
GGCAAGCCCACGCTGCTGGAGGCGGGAGGCCCACCCTTTCTGCTGCCCCT
CGTGCAGCGAGATAAGCTGTACAACATCGCCGAGATCACGCGAAAGATCC
AGGGCCCCGGCACGGTGTTCGCCGTGGGCGCCGGAGCGGGACCTTGGCCC
ATCCGGGGATCCAACTGCGAGGGCATCTTCAACTTGTCCGTGAACGAGAA
GGATGAGCTCACGAACGGCAGCTACACGGCCACTGTGAGGGGAGAGCAGG
AGGAGTGCGTCCTGGAGAAGATACCCCACACAGAGCCCAGGTGCGCCCTG
CTTCTCAACCTCTTCCTCAGCCAGGGCAAGCCTGGTCAGGTGTTGAAAAT
CACCGCCAAGCAGCGCACTGGCGAACAGAACTTCATCGAGTGCATCCGCA
AGGGCCTGGAGAACCACTACGGGGACAAGGTGGTGGGTCTGGGTGGCATT
TTTCTGATCAAGAAGGGCGCTGCCCACCAGCACGTGATGCGGGACTTCAG
CAAGACGCCCATCAACAGCGACGAGGAGGTGAACGAGTGGCTCAAGTTCT
ACGAGATGCCCGCCCAGCTGAACGCCGTGGGCACGCTGGTGACCAAGGAG
CACGACCTGGACCTTCGCCTGCAGCACTTTCACTCCTTCTTCTTCAGCAA
CTGGGG
MXO03794.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:52:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9119-PA | 969 | CG9119-RA | 1..848 | 9..856 | 4190 | 99.7 | Plus |
| CG32335-PA | 1086 | CG32335-RA | 853..908 | 744..799 | 155 | 91 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9119-RA | 1212 | CG9119-RA | 157..1004 | 9..856 | 4210 | 99.8 | Plus |
| CG32335-RB | 1082 | CG32335-RB | 92..897 | 30..835 | 895 | 74.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1203524..1204287 | 856..93 | 3790 | 99.7 | Minus |
| 3L | 28110227 | 3L | 1202056..1202758 | 835..133 | 860 | 74.8 | Minus |
| 3L | 28110227 | 3L | 1204555..1204639 | 93..9 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:45:12 has no hits.
MXO03794.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:52:12 Download gff for
MXO03794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9119-PA | 1..848 | 9..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:01 Download gff for
MXO03794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9119-RA | 149..1004 | 1..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:00 Download gff for
MXO03794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9119-RA | 149..1004 | 1..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:00 Download gff for
MXO03794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1203524..1204286 | 94..856 | 99 | <- | Minus |
| 3L | 1204555..1204647 | 1..93 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:01 Download gff for
MXO03794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1203524..1204286 | 94..856 | 99 | <- | Minus |
| arm_3L | 1204555..1204647 | 1..93 | 95 | | Minus |
