MXO03802.5prime Sequence
873 bp (790 high quality bases) assembled on 2007-07-18
> MXO03802.5prime
CAGTCGACATGATGAACGTAGGCNGCNTCGGCNTGCTGAAAAAGCTCAGG
CACACCTGGCGCACGTTTCCACGCCTTATGGAGCCAAGGTGACCAGTCTG
GGTGGCGACGAGGTGGGCAGTGGCACAGGAATCGGACAGATCACCGGCGG
CGTGCGTACAAGTGATGGGCCACAGAAAGTGAACACGCCTTCCAAGGAGA
TTGTCACCCACCTGCCACCTCTCACCGAGCCACTGCCCAACCTGCCGGAG
GCCGTTTACACAGCTCCACTGGCGGAAAGCGCCATTACGAAGGTAACGAC
GCTGCCGAACGGTCTGCGGATTGCCTCGGAACCGCGGTACGGACAGTTCT
GCACTGTGGGCCTGGTTATCGACTCCGGGCCGCGCTACGAAGTCGCTTAC
CCCAGCGGCGTGTCGCACTTTCTCGAAAAGCTAGCTTTTAATTCCACAGT
CAACTTTCCCAACAAGGACGCCATACTTAAGGAGCTGGAGAAGAACGGAG
GCATTTGCGACTGTCAGAGCTCGCGGGACACGCTCATTTATGCCGCCAGC
ATCGACAGCCGGGCTATTGATTCCGTGACGCGTCTGCTGGCGGACGTCAC
TTTGCGGCCCACACTTAGCGACCAGGAGGTGAGTCTGGCCAGGCGGGCCG
TCAACTTTGAGCTGGAGACACTGGGCATGCGGCCTGAGCAGGAGCCAATA
CTGATGGACATGATCCACGCGGCAGCATTCAGGGACAATACCTTGGGCCT
GCCCAAGCTATGTCCCCTTGAGAACCTGGACCACATAAACCGCAATGTGC
TAATGAACTACCTTAAGTACCATCACTCTCCCAAGCGCATGGTCATCGCT
GGTGTAGGCGTGGATCATGATGA
MXO03802.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:52:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8728-PA | 1671 | CG8728-RA | 77..866 | 84..873 | 3925 | 99.8 | Plus |
| CG8728-PA | 1671 | CG8728-RA | 20..73 | 28..81 | 251 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8728-RA | 1935 | CG8728-RA | 158..1025 | 7..873 | 4192 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7937957..7938375 | 861..443 | 2095 | 100 | Minus |
| 2R | 25286936 | 2R | 7938437..7938819 | 442..61 | 1805 | 98.7 | Minus |
| 2R | 25286936 | 2R | 7938898..7938957 | 66..7 | 222 | 90 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:49:10 has no hits.
MXO03802.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:52:22 Download gff for
MXO03802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8728-PA | 14..865 | 22..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:23 Download gff for
MXO03802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8728-RA | 154..1024 | 1..872 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:58 Download gff for
MXO03802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8728-RA | 154..1024 | 1..872 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:58 Download gff for
MXO03802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7937957..7938375 | 443..861 | 100 | <- | Minus |
| 2R | 7938437..7938815 | 65..442 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:23 Download gff for
MXO03802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3825462..3825880 | 443..861 | 100 | <- | Minus |
| arm_2R | 3825942..3826320 | 65..442 | 98 | <- | Minus |
