MXO03803.5prime Sequence
793 bp (755 high quality bases) assembled on 2007-07-18
> MXO03803.5prime
CAGTCGACATGCAGAGCTTTCTGGGAGTAGCAATCATTCTGGCTCTTCTG
AGCCTGGTGGCTAGCCAGGCGCAGAACAGCTCGCAGTCCATGGATCTCTA
TATACTCCAGAATCAGCGGCAATATGACGCGAAGATCAAACAGCTGGCAG
ATGAATTAGCCAATTTTAAGCAGCTATTTCAGAAGCAAATCAATGCGCTC
GATGTGCAAGCAGATTCGATGCAGCTAAAATTGGAACAAGCCTCCGCTCA
CCTGGATCCCATTATCCTGATCGATTCCTGGAGCAAACAATGCGTACAGA
ACTATAGTGTTACTATACCAACGATCACCGTGGCCAGGGACTCCATTATC
AAGTGTAAGGAAAGTATTAGTGGCATTTTAAATGCACCTGAGAGCACCTA
CAACACCCTGAATAACTACTATAAAAATAACGTGAAGAATGGTTTGGCAC
AATGCCTAAAACTTCATCCAACTGCCCAGTTAAATTACACACTCTGTGTA
ACCAAGGTGATTGGTGATGCCAATAAGTATACCATCACCACACAGAATAC
TTTCAATACCAACCTGAAGAAGTTCGGAATGCACGGCTGATAATCGCATT
AAGGAACTCCTGGCAGTGCTCCTTTGGCCAGGTGTACTCTATTACCTCCA
AAGTGGAACTGGCGCTGCAACTCATCGACTCCTGCATTTCCAATAAGGTG
ATCTGTGGATCCTTTGAAGAGCAATCGTGTCCGAATAAGTCATATGTTTC
TCTGTCGGAGATCAATCCTCGCAACGATACCATCCGGAATCCC
MXO03803.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:52:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13335-PA | 1233 | CG13335-RA | 397..958 | 9..570 | 2785 | 99.8 | Plus |
| CG13335-PB | 837 | CG13335-RB | 1..562 | 9..570 | 2785 | 99.8 | Plus |
| CG13335-PA | 1233 | CG13335-RA | 988..1179 | 602..793 | 960 | 100 | Plus |
| CG13335-PB | 837 | CG13335-RB | 592..783 | 602..793 | 960 | 100 | Plus |
| CG13335-PA | 1233 | CG13335-RA | 958..988 | 571..601 | 155 | 100 | Plus |
| CG13335-PB | 837 | CG13335-RB | 562..592 | 571..601 | 155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42807-RB | 2101 | CG42807-RB | 222..1012 | 1..793 | 3870 | 99.4 | Plus |
| CG42807-RA | 957 | CG13335-RA | 7..797 | 1..793 | 3870 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13572030..13572538 | 509..1 | 2500 | 99.4 | Minus |
| 2R | 25286936 | 2R | 13571684..13571966 | 793..509 | 1325 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:06:51 has no hits.
MXO03803.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:52:26 Download gff for
MXO03803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13335-PB | 1..783 | 9..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:46 Download gff for
MXO03803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42807-RA | 3..793 | 1..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:42 Download gff for
MXO03803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42807-RA | 7..797 | 1..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:42 Download gff for
MXO03803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13571684..13571965 | 510..793 | 99 | <- | Minus |
| 2R | 13572030..13572538 | 1..509 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:46 Download gff for
MXO03803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9459189..9459470 | 510..793 | 99 | <- | Minus |
| arm_2R | 9459535..9460043 | 1..509 | 99 | | Minus |
