MXO03804.5prime Sequence
752 bp (710 high quality bases) assembled on 2007-07-18
> MXO03804.5prime
CAGTCGACATGGTTTACCCCAGTGACACGTCGGACGCCAACAACGAGGAG
CTGGCGCTGGAGCACAGTGTTGCACATGGCAATGTCCACGGTAACGGCAC
TGGCACTGGTGGTAGCTCACCCGGGACAACAACTGCTCCGAACGGGGACA
ACAAAGTCAATCAGCGCCATTACGAGCCGGCCGAGCGCTTCATCATCACC
AAGAACGTGGTCGTGATAGGCCTGGCTTTCATGATTCACTTCACGGCCTT
CCACGGCACATCGAATCTGCAGAGCTCGGTGAACGCGGATAAGGCCCTGG
GCACCACCACGCTTGCCGTCATCTACGGCTCGCTGATACTGTCCAACATC
TTCCTGCCGATGACCGTGATAAGATGGTTCGGTTGCCGGTTGACCATGGC
GCTGGCCCTCTTCGCCTACATGCCCTACATAGCCGCCCAGTTTTACCCAC
GGTTCGAGACCCTAATCCCGGCGGCCCTGATGGTGGGTTTCGGTGGCGGG
CCATTGTGGTGCTCCAAGTGCACCTACCTATCCACCGTCTCCGAGGCACT
TACCCAGGTGCGGGGCAACAAGTCGCGTAAGGATGTGAACACCGTCAAGT
TCTTCGGCCTGTTCTTCATCTTCTACCAAATGGCCCATGTGTGGGGCAAC
CTCATATCCTCCTCGGTTCTAACCCTGAATGCCCCTGCTGCCCAATCCGC
GGCAAATGATTCTTTCGAGCTGGAGGTGCAGCGGGAACTGGAGAGAAACA
GG
MXO03804.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:52:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2121-PA | 1569 | CG2121-RA | 1..744 | 9..752 | 3645 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2121-RB | 1973 | CG2121-RB | 225..971 | 6..752 | 3690 | 99.6 | Plus |
| CG2121-RA | 1910 | CG2121-RA | 162..908 | 6..752 | 3690 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8397781..8398161 | 752..372 | 1860 | 99.2 | Minus |
| 2R | 25286936 | 2R | 8403891..8404258 | 373..6 | 1840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:27:10 has no hits.
MXO03804.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:52:31 Download gff for
MXO03804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2121-PA | 1..744 | 9..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:51 Download gff for
MXO03804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2121-RA | 157..908 | 1..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:57 Download gff for
MXO03804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2121-RA | 157..908 | 1..752 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:57 Download gff for
MXO03804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8403891..8404261 | 1..373 | 99 | | Minus |
| 2R | 8397781..8398159 | 374..752 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:51 Download gff for
MXO03804.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4285286..4285664 | 374..752 | 99 | <- | Minus |
| arm_2R | 4291396..4291766 | 1..373 | 99 | | Minus |
