MXO03806.5prime Sequence
871 bp (709 high quality bases) assembled on 2007-07-18
> MXO03806.5prime
CAGTCGACATGTTCGCCACCCAGGACACCATTCTGAAGTTGCTGACCCTG
TGCGCCCTGGCACATTCTATAACCGCATTGGCCCTGCAGGAACGGTCTCC
GACTCCAGGAGGATCTGCTCCCTTGGATTCCAGCCACAAGTACTTGATAG
TGCGCGGTGAGTCGCCCAGTGAATCCCAGGAGCATGTGGAGTTCGATAAT
GCCGCCACCCTGCTCCTGAGAGCCTTCAAGAATCAACAGATTCCCGCATC
CGCGGAGCTGGAGGAATGCAGTGCGCCCAGTCACAAGGCCACCTTCTCGG
GCTACGACTACGTGATTCTGCTGGGCATGCTGGTCATCTCGCTGGGCATC
GGCATCTTCATAGGCTTCTTCCAGAAGGGCGGCAGCTCGTCCAACGAGTT
CCTGCTGGGCTCCGAGATGAGCATCTTCCCGGTGACACTCAGTCTCACGA
CCAGCTTCATCACGGCCATCGAACTGCTGGGAAATCCATCCGAGATGTAC
TTCCAGGGCACCCAGTTTGTGCTCATCGTAATACCCATGGTGATTGTCAT
TCCGGTTGCTGTGAAGATCTTCTATCCCATTTACTTTAAAATGGAGCTCA
CCAGCTGCTATGAGTATCTGGGCATTCGGTTTGGCAAGGAGATCAGGATT
CTGGGTGCAGTGCTCTATGTCATTCACATGTGCTTCTACACGGCTGTGGC
AGTCCTGGCACCGGCAAATTGCTCTGTCTAGGGCCACGGGACTGGACACC
AAAATCGCCGTGTTCCTGATCTATGTGATCTGCGTTTTCTACTCCTCACA
GGGAGGCATGAAGGCTGTAATCATTGCCGACTCCTTCCAGGCTGCTGTCC
TGACTGTATCTTGGTACTGAT
MXO03806.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:52:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5687-PA | 2052 | CG5687-RA | 1..351 | 9..359 | 1755 | 100 | Plus |
| CG5687-PA | 2052 | CG5687-RA | 355..709 | 363..717 | 1750 | 99.7 | Plus |
| CG5687-PA | 2052 | CG5687-RA | 708..851 | 717..860 | 595 | 96.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5687-RB | 3115 | CG5687-RB | 765..1627 | 9..871 | 4135 | 98.8 | Plus |
| CG5687-RA | 2752 | CG5687-RA | 402..1264 | 9..871 | 4135 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1935613..1936280 | 676..9 | 3295 | 99.6 | Minus |
| 3L | 28110227 | 3L | 1935387..1935554 | 841..673 | 720 | 96.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:07:02 has no hits.
MXO03806.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:52:41 Download gff for
MXO03806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5687-PA | 1..863 | 9..871 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:53 Download gff for
MXO03806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5687-RA | 398..1264 | 1..871 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:48 Download gff for
MXO03806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5687-RA | 398..1264 | 1..871 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:48 Download gff for
MXO03806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1935298..1935329 | 841..871 | 93 | <- | Minus |
| 3L | 1935388..1935549 | 678..840 | 96 | <- | Minus |
| 3L | 1935612..1936284 | 1..677 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:53 Download gff for
MXO03806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1935298..1935329 | 841..871 | 93 | <- | Minus |
| arm_3L | 1935388..1935549 | 678..840 | 96 | <- | Minus |
| arm_3L | 1935612..1936284 | 1..677 | 98 | | Minus |
