MXO03807.5prime Sequence
874 bp (749 high quality bases) assembled on 2007-07-18
> MXO03807.5prime
CAGTCGACATGACCTCGCGAATGTTCAAGTTCGGCGTAACAGCCGCTAGC
GCCTGTGTTGGTTCCGTCCTGGCCTCGTACACCCTGGATCGCTGGAACAC
CCCCCATGTGGTTAACAATGCCACCGTGCCGCCGAAAAGGAAGCGCACGC
TGCCCCCGCGAGCGGATCAGATCAAATCCCTGATGAGCGGCGAGGAGTTC
GACGTGCTGATCATCGGCGGAGGAGCCACGGGAGCTGGATGTGCTCTCGA
CTCGGTTACAAGGGGTCTTAAGACCGCCCTGGTGGAGCTGGATGACTTTG
CCAGCGGAACTTCCTCGAGATCCACGAAACTTATCCATGGCGGAGTGCGA
TATCTGCAGAAGGCCATTTTGGGCCTAGATCTAGAGCAGTACCGCATGGT
GAAGGAGGCGCTGGCTGAGCGCGCCACCATGCTCGAATCGGCGCCCCACT
TGACCCACCCTCTGCCCATCATGCTGCCAGTTTACACATGGTGGCAGGTT
CCTTACTACTGGGTGGGCATCAAGGCCTACGATCTGGTGGCCGGCGATCG
CAATGTGAAAAGCTCGTACTANCCTCTCCAAGAAGGATGCCCTCGAAACT
GTTCCCCATGCTCAAGAAGGACAAGCTGTGCGGCGCTATCGTCTACTATG
ATGGCCAGCAGGATGATGCCAGGATGTGTCTGGCGGTGGCGCTGACTGCC
GCTCGTCACGGTGCCACTGTGTGCAATCACGTGGAGGTGAAGGAGCTGCT
GAAGAAGGACGACGGCACTGGCAAACAGGTGCTGTGCGGAGCCAAGGTCA
AGGACCATATCTCCGGCAAAGAGTTCACCGTGAAGGCCAAGTGCATTGTT
AATTGCCGCCGGTCCTTCACGGAC
MXO03807.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:52:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8256-PC | 2175 | l(2)k05713-RC | 1..563 | 9..571 | 2815 | 100 | Plus |
| CG8256-PB | 2175 | l(2)k05713-RB | 1..563 | 9..571 | 2815 | 100 | Plus |
| CG8256-PA | 2175 | l(2)k05713-RA | 1..563 | 9..571 | 2815 | 100 | Plus |
| CG8256-PC | 2175 | l(2)k05713-RC | 587..843 | 597..853 | 1260 | 99.6 | Plus |
| CG8256-PB | 2175 | l(2)k05713-RB | 587..843 | 597..853 | 1260 | 99.6 | Plus |
| CG8256-PA | 2175 | l(2)k05713-RA | 587..843 | 597..853 | 1260 | 99.6 | Plus |
| CG7311-PA | 2019 | CG7311-RA | 186..222 | 191..227 | 135 | 94.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gpo-1-RD | 2637 | CG8256-RD | 332..1199 | 5..874 | 4225 | 99.3 | Plus |
| Gpo-1-RA | 2433 | CG8256-RA | 128..995 | 5..874 | 4225 | 99.3 | Plus |
| Gpo-1-RB | 2492 | CG8256-RB | 187..1054 | 5..874 | 4225 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15859565..15859939 | 865..488 | 1725 | 98.9 | Minus |
| 2R | 25286936 | 2R | 15860375..15860531 | 266..110 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 15860007..15860119 | 487..375 | 565 | 100 | Minus |
| 2R | 25286936 | 2R | 15860195..15860305 | 374..264 | 555 | 100 | Minus |
| 2R | 25286936 | 2R | 15860599..15860706 | 112..5 | 525 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:49:12 has no hits.
MXO03807.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:52:46 Download gff for
MXO03807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8256-PB | 1..864 | 9..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:25 Download gff for
MXO03807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gpo-1-RB | 184..1054 | 1..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:58 Download gff for
MXO03807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gpo-1-RB | 184..1054 | 1..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:58 Download gff for
MXO03807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15860601..15860709 | 1..110 | 97 | | Minus |
| 2R | 15859555..15859939 | 488..874 | 98 | <- | Minus |
| 2R | 15860007..15860119 | 375..487 | 100 | <- | Minus |
| 2R | 15860195..15860304 | 265..374 | 100 | <- | Minus |
| 2R | 15860377..15860530 | 111..264 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:25 Download gff for
MXO03807.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11747060..11747444 | 488..874 | 98 | <- | Minus |
| arm_2R | 11747512..11747624 | 375..487 | 100 | <- | Minus |
| arm_2R | 11747700..11747809 | 265..374 | 100 | <- | Minus |
| arm_2R | 11747882..11748035 | 111..264 | 100 | <- | Minus |
| arm_2R | 11748106..11748214 | 1..110 | 97 | | Minus |
