MXO03809.5prime Sequence
870 bp (731 high quality bases) assembled on 2007-07-18
> MXO03809.5prime
CAGTCGACATGGAAAGTTAGTGGCAGGAAGTGAAGTCTCTGCTGAAGACC
GTCTTCTGCTTTGTGGTGGCTATGATGCTAGAGGCTTTGCTGATGTTATC
ATTCCTGTGTGCTCACTTTGGCAACGAACTATCCAACTATGTGCTGAGCA
TCAAGTACCCGAACCTGACCATCTCAAAGTCGAAGAAGATCCGCACCTTA
ATCGACACGCCGAAGAATGCGGGCGTATTTCACTTCCTGCTGCAAGTGGA
GGGCGACTGTGACTTCGAGCGGATACGGATGGCCTATGCCCAGCATCTGA
CTGACCTGAGGGACAAGACCGGGATGCTCAGGTTCCCCAAGCTGCGTCAA
AAACTTGTCACCTGTTGGGGGCATTATGCGTGGGTGAATGACAGCAGCGG
CTTCAACATCAACAACCACGTCTTACTCAGCACCCACAAGTATCGAGGTC
GTCCGGTTAGCGAATCAAATATTCAGGAGTATGTCAGCGAGCTGGCCACG
AAGTACATCCCATCCGATCTCCCCCAGTGGCAGGTGATCGTGATCCCCAA
CTCGGATAGCACACAGCCCTACTACATACTCATTAAGCTGCACCACCTGA
TAATTGCCGAGGAGGAGGATCTGCATGTGAGTGAGATGCTCCTGCTTCAG
GATCCCCATAAGAAAACCACAATGACCCTAAGCGATGGATTGGATTGGGA
CAGTTCGAGTCCAAAACTTTCCCGCTTTGTGCGAAAGCCGGAACACATAA
GCAGACTCATCAATCATATAATCCATCTTATCATTTGCCGTTGGCAAAAG
TTCATCTACGAATTTGAATCTCTTGAAACCCCCGATGGTTCAACGTCCAG
TGATCAGGTTGGAAAAACCT
MXO03809.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:52:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33120-PA | 2070 | CG33120-RA | 13..857 | 21..865 | 4175 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33120-RA | 2301 | CG33120-RA | 154..1010 | 9..865 | 4225 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18842691..18843162 | 865..394 | 2360 | 100 | Minus |
| 2L | 23513712 | 2L | 18843219..18843507 | 397..109 | 1445 | 100 | Minus |
| 2L | 23513712 | 2L | 18844256..18844345 | 110..21 | 420 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:49:47 has no hits.
MXO03809.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:52:54 Download gff for
MXO03809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33120-PA | 1..860 | 9..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:12 Download gff for
MXO03809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33120-RA | 154..1013 | 9..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:41:38 Download gff for
MXO03809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33120-RA | 154..1013 | 9..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:41:38 Download gff for
MXO03809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18842688..18843158 | 398..870 | 99 | <- | Minus |
| 2L | 18843219..18843507 | 109..397 | 100 | <- | Minus |
| 2L | 18844258..18844351 | 15..108 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:12 Download gff for
MXO03809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18842688..18843158 | 398..870 | 99 | <- | Minus |
| arm_2L | 18843219..18843507 | 109..397 | 100 | <- | Minus |
| arm_2L | 18844258..18844351 | 15..108 | 95 | | Minus |
