MXO03811.5prime Sequence
877 bp (862 high quality bases) assembled on 2007-07-18
> MXO03811.5prime
CAGTCGACATGGGTGGAAAGAGTACATCTGCCTGCTGGCTTTCATAATAG
GAGCATCATTATTGACAACAATCGATGCTAAGACAACCCAANATGTTAAT
GCCGAATTAAACAGGATTCCTGCTTCGAAATGGTTGCAATATGTAGAAAC
GGCGTTGGACTCAGTAAATAGGCAAAAGCGACTGGAGGACAATCTATTAG
GTTCCGATATCACTGTTAAGAACGGCAGCCTTTCACACGCTCAACTTCTG
GATACTTTACCAAGCCTAGCTTCGAAGAAGGACAATAAGCTCGCCCTGAA
GATCCTTAAGTCCAGCTTGCTCGTTTTCAACAGCGAATGCCTGCCTAATA
ATATCGATGGAGACAAGTGCCGCAGTTACCTGGAGCAAAAACCACTTCCG
GAGGGCAGTAGCTTGCGAACTGAGTGTGAGAACTCACTCAAGGGAAATCG
AGAGGGTCACTATGCTTTCAGAAGGCTACTTGGGAGCAGCCACTACAGGA
ACGGTTTCTATCAGATGTTTCCCAATTCCGGAAGACGCGAAACAGTGCCG
GCTGCGTGGTCCATTAGTAAGGAAGCTGTATGAGCCCGATCACATTCAGA
TCTCCAAACAACAAACCTTCGAAAGCAATTCCAATTTGGCCCTCCCTCAG
TGGGCTCAATTTGTGGAGCATGATCTTAGCAAGCCGGTGTCGCAATCAAT
GAGCAATGGAGCCCCAATAGAGTGCTGCAGCCGTGACCAGATCAACCTTC
AGCCGCGTCACCACCACCCGGCATGTGCTCCGATTCTGTACCAGCCCGGT
GGGAAATACGACGTGCCCAGCTGCCTTAACTATGTGCGAAGTGCTCTGGC
CGTGGCTGATTGCATTTTCNGTGGCGC
MXO03811.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:53:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8913-PA | 2094 | CG8913-RA | 86..566 | 93..573 | 2405 | 100 | Plus |
| CG8913-PA | 2094 | CG8913-RA | 566..869 | 574..877 | 1476 | 99.3 | Plus |
| CG8913-PA | 2094 | CG8913-RA | 14..74 | 21..81 | 305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irc-RB | 2390 | CG8913-RB | 202..1070 | 9..877 | 4158 | 98.6 | Plus |
| Irc-RA | 2341 | CG8913-RA | 202..1070 | 9..877 | 4158 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17004467..17004801 | 180..514 | 1675 | 100 | Plus |
| 3R | 32079331 | 3R | 17004864..17005053 | 513..703 | 905 | 99.5 | Plus |
| 3R | 32079331 | 3R | 17005170..17005344 | 703..877 | 849 | 98.9 | Plus |
| 3R | 32079331 | 3R | 17004213..17004300 | 93..180 | 440 | 100 | Plus |
| 3R | 32079331 | 3R | 17003089..17003149 | 21..81 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:49:54 has no hits.
MXO03811.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:53:04 Download gff for
MXO03811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8913-PA | 1..869 | 9..877 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:15 Download gff for
MXO03811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irc-RA | 202..1070 | 9..877 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:41:43 Download gff for
MXO03811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irc-RA | 202..1070 | 9..877 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:41:43 Download gff for
MXO03811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17003076..17003151 | 9..83 | 93 | -> | Plus |
| 3R | 17004204..17004300 | 84..180 | 95 | -> | Plus |
| 3R | 17004468..17004801 | 181..514 | 100 | -> | Plus |
| 3R | 17004866..17005052 | 515..702 | 99 | -> | Plus |
| 3R | 17005170..17005344 | 703..877 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:15 Download gff for
MXO03811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12828798..12828873 | 9..83 | 93 | -> | Plus |
| arm_3R | 12829926..12830022 | 84..180 | 95 | -> | Plus |
| arm_3R | 12830190..12830523 | 181..514 | 100 | -> | Plus |
| arm_3R | 12830588..12830774 | 515..702 | 99 | -> | Plus |
| arm_3R | 12830892..12831066 | 703..877 | 98 | | Plus |
