MXO03815.5prime Sequence
840 bp (757 high quality bases) assembled on 2007-07-18
> MXO03815.5prime
CAGTCGACATGGCCAACAACAACTACGCCGGGTTTAACTACGGCGGCACC
CAGTACAATACGGGCCAAGTCTCGTACCCGGCGGTAACCAATGCCACCTA
CGCGAATGCGGCCGCCTATCAGAATGCCGCTGTGGCCGCCGGACAGGGTG
GTTATGGCGGAGCAGCAGGAGCGGGCGCTGGCGCCACCTCTGGCCCTGGG
GCGGGGGGTTATGGTGGCTACGGCGACTATCGAAGTGCCATGCAATACGA
CGCCACCAAGACATTCTATCAGCAGTCGCCGGCCAGCTACAACGCCTCCG
GTTCGACAGCCTCGGTCAGCAAGACGCACTACTCGGCTCCGCCAGTCAAG
AATCAGGTCAAGGGCAAGATGGACAAGTCGAACGGTGGTCCCAAGCCCCC
TAGTTCGGCTCCTCCGGCGGGCAACAATTACAGTGGCTATGATACAGCAC
TCTACAATGCGGCAAGCATGTATGTGGCCCAACAGCATCAGGGCAATCCA
AACCAAAAACCAAATGGCGGCGCCAATAACTGGTATCAGCGTAAGATGGG
AGCCACCATACCAGGAGCAACGGCCATAAGGGGTATGCGTCCGAAGGCAC
CTCCACGTCCCCAGCAGCTGCACTACTGCGAAGTGTGCAAAATCTCGTGC
GCCGGGCCGCAGACTTATCGCGAGCATCTGGAGGGTCAGAAGCATAAGAA
ACGCGAGGCTTCGCTGAAGATGTCCGCTAGTGCCAACAGTGCTACACAAA
ATCGTGGTAACAACTACCACTGCGAGCTGTGCGATGTAACATGCACTGGT
ACGGACGCATATGCCGCCCATGTACGCGGAGCCAAGCATC
MXO03815.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:53:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5215-PA | 1908 | Zn72D-RA | 1..832 | 9..840 | 4160 | 100 | Plus |
| CG5215-PB | 2655 | Zn72D-RB | 1..832 | 9..840 | 4160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zn72D-RD | 3240 | CG5215-RD | 226..1057 | 9..840 | 4160 | 100 | Plus |
| Zn72D-RC | 3106 | CG5215-RC | 92..923 | 9..840 | 4160 | 100 | Plus |
| Zn72D-RF | 3423 | CG5215-RF | 409..1240 | 9..840 | 4160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16111038..16111869 | 840..9 | 4160 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:49:57 has no hits.
MXO03815.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:53:18 Download gff for
MXO03815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5215-PB | 1..832 | 9..840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:16 Download gff for
MXO03815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RF | 401..1240 | 1..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:41:45 Download gff for
MXO03815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zn72D-RF | 401..1240 | 1..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:41:45 Download gff for
MXO03815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16111038..16111876 | 1..840 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:16 Download gff for
MXO03815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16104138..16104976 | 1..840 | 99 | | Minus |
