MXO03816.5prime Sequence
819 bp (711 high quality bases) assembled on 2007-07-18
> MXO03816.5prime
CAGTCGACATGTTCGGAAAAACTCGTCAGTTGCTATTCAGCGTTTGCATT
CGGTCCCCGGTGTGCCGACGATATGTCCCGAAGTTCATCAAGCGTTCATA
CGCCTCGCAGGCGGTTAACCAGATGCTGCTGCTCCAGCAGATGGACATCT
GTGCGGATCAGCCGTCGCGAGCCTTGGTCATAGGCGTCTATGCGGATGAG
GAGGACAAGAACGATGCCGGCATTCTGACCCCCGCCGGCTGGCGTTATAA
TCTTCAAAAGACAAATGGTCGTCTGATAGAGGTGCTCCGGATGTCGGGAC
CCATGCCCAAGAGAGGCGAGGCCCGTCTTCTCTTCGCCGTTGAGCCGGAG
CGTATTCCCTATTATTCTGTGGTGGCGGTCGTTGGTCTGGGTAAGGAGTG
CTTGGGCTATAATCCCTATGAGGTCCTGGACGAACAGAAGGAGGCTATCC
GAAGGTCGGTGGCCGCTGCCTGTAGGATTCTCGCCGAGTTGGATACCGAT
CGTATTGAGGTGGAGAACTGCGGACACGCCGAATCGGCTGCCGAAGGTGC
CGCCTTGGGTATCTGGTTGTACCAGGAATTGCGCGATCCCAAGACCCGAA
TCTTTGTTCCGGCCATCGATTTGTACGCCACCAAGGACGAGGTCTGCGAC
ATAGAAGGATGGCGCATTGGGCTGCAAAAGGCTGCCGCGCAGAACCTGAC
CCGCCAGTTGCAGGAGATGCCCTCCAACCTTTTGACCCCCACTGCCTTTT
GCCAGAATGTCGTCGAAGTGCTCTGTAAGTCCGGCGTCAATGTAGAGGTC
AAAGTCGAGGGTTGGGCTG
MXO03816.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:53:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6372-PA | 1668 | CG6372-RA | 1..811 | 9..819 | 4005 | 99.7 | Plus |
| CG32351-PA | 1659 | CG32351-RA | 596..802 | 613..819 | 735 | 94.2 | Plus |
| CG32351-PA | 1659 | CG32351-RA | 82..142 | 99..159 | 155 | 90.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-Lap1-RA | 2121 | CG6372-RA | 203..1013 | 9..819 | 4025 | 99.8 | Plus |
| S-Lap2-RA | 2093 | CG32351-RA | 338..1058 | 99..819 | 1805 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8617437..8618247 | 9..819 | 4025 | 99.8 | Plus |
| 3L | 28110227 | 3L | 8620225..8620945 | 99..819 | 1805 | 83.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:20 has no hits.
MXO03816.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:53:23 Download gff for
MXO03816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6372-PA | 1..811 | 9..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:31 Download gff for
MXO03816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap1-RA | 195..1013 | 1..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:54 Download gff for
MXO03816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-Lap1-RA | 195..1013 | 1..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:54 Download gff for
MXO03816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8617429..8618247 | 1..819 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:31 Download gff for
MXO03816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8610529..8611347 | 1..819 | 99 | | Plus |
