MXO03817.5prime Sequence
905 bp (572 high quality bases) assembled on 2007-07-18
> MXO03817.5prime
CAGTCGACATGGACCAGCCCGACGACCATTTCCGCTACATACACAGCTCC
TCGCTCCACGAGCGAGTGCAAATCAAGGTAGGGACGCTCGAGGGGAAAAA
GCGCCAGCCGGACTATGAGAAACTGCTAGAGGATCCGATCCTGAGATTCT
CGGGCCTGTACTCCGAGGAGCACCCCTCGTTCCAGGTGCGCCTGCAGGTG
TTCAACCAGGGCAGACCCTACTGCCTCCCAGTGACCAGCTCCTACAAGGC
GTTCGGCAAGCGATGGAGCTGGAACGAGTGGGTGACGCTGCCGCTGCAAT
TCTCCGACCTGCCCAGAAGCGCCATGCTGGTGCTGACCATCCTGGACTGC
TCGGGCGCGGGCCAGACCACGGTCATTGGAGGCACCTCCATCTCAATGTT
CGGCAAGGACGGCATGTTCCGCCAGGGAATGTACGACTTGCGAGTGTGGC
TGGGGGTCGAGGGCGATGGCAACTTTCCCAGTCGCACGCCCGGCAAGGGC
AAGGAGTCGTCCAAGTCGCAGATGCAGCGCCTAGGAAAGCTGGCCAAGAA
ACACAGGAACGGCCAGGTGCAAAAGGGTGGACTGGCTGGACAGACTGACG
TTTCGCGAAATCGAGGTGATCAACGAGCGCGAAAAGCGTATGTCGGACTA
TATGTTTCTTATGATCGAGTTTCCCGCCATCGTGGTGGATGACATGTACA
ACTACGCCGTGGTCTACTTCGAGCCGGAGGGTGACGTCAAATACAAGCTG
CCGGCCAAACCTAAGCTGGTTTCTGTGCCGGACTCCGAGATCCAAATGGA
AAATCTGGTCGAGCGCAAGCACCATCGATTGGCCCGTTCGGAGCGTTCAG
GCATCTCGGACAGAGATGCCAAGCCGACAGCCAGCATTCGCGATCAGCTC
CACAC
MXO03817.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:53:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5373-PA | 2850 | Pi3K59F-RA | 1..568 | 9..576 | 2840 | 100 | Plus |
| CG5373-PA | 2850 | Pi3K59F-RA | 567..896 | 576..905 | 1650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pi3K59F-RA | 3164 | CG5373-RA | 82..977 | 9..905 | 4460 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23560719..23561340 | 80..702 | 3065 | 99.8 | Plus |
| 2R | 25286936 | 2R | 23561398..23561579 | 703..884 | 910 | 100 | Plus |
| 2R | 25286936 | 2R | 23560573..23560643 | 9..79 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:19:08 has no hits.
MXO03817.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:53:27 Download gff for
MXO03817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5373-PA | 1..896 | 9..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:48 Download gff for
MXO03817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi3K59F-RA | 75..977 | 1..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:59 Download gff for
MXO03817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi3K59F-RA | 75..977 | 1..905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:59 Download gff for
MXO03817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23560566..23560643 | 1..79 | 94 | -> | Plus |
| 2R | 23560719..23561340 | 80..702 | 99 | -> | Plus |
| 2R | 23561398..23561579 | 703..884 | 100 | -> | Plus |
| 2R | 23561635..23561655 | 885..905 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:48 Download gff for
MXO03817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19448089..19448166 | 1..79 | 94 | -> | Plus |
| arm_2R | 19448242..19448863 | 80..702 | 99 | -> | Plus |
| arm_2R | 19448921..19449102 | 703..884 | 100 | -> | Plus |
| arm_2R | 19449158..19449178 | 885..905 | 100 | | Plus |
