MXO03820.5prime Sequence
877 bp (795 high quality bases) assembled on 2007-07-18
> MXO03820.5prime
CAGTCGACATGCTTATTAGAAGAATTAAGTGCCTCAGATATTTGGGAACT
CGCTACAACAGTTCGCACTATGTGACAACTCCAATTTTCTATGTAAATGC
AGCTCCTCACATTGGACACCTGTACTCAGCGGTCATAGCCGATGCCCACT
GTCGCTACCAGAGGCTAAGGTATCCAGAGCAGGATGTACGACTCTGCACG
GGAACGGATGAGCACGGCACAAAGATCCAGCAGGCGGCATCTCTTCACGG
GGTGCCCGTTGCCAAATACTGTGATGATATATCGCAGCGATATCGAGAGG
TCTTCCGCAGTGCCAGCATCCAGCAGGATGACTTTATTCGCACCACGGAG
GATCGCCACAAGCGGGCAGTGGCCAATTTCTGGCGCACACTTCACACACG
CGGCCACATATATTCGGCCGCCTACAGTGGTTGGTATTGCGTGTCTGACG
AAACCTTCCTCACCGACTCCCAGCTGAGATTGGACGAGGCCACTGGTACC
CGATACTCCCTGGAATCTGGACATCCCGTCGAGTGGACCGAGGAAACGAA
CTATATGTTTCGACTGTCACAATTCCAGGACGATGTGCGCCATTGGGTGA
AAACGGAGGCGCGCGTACGTCCGGCCAAGTTCGAAAAGATTCTGCTGGAT
ACGCTCAGCGAACCACTGCCGGATGTATCGGTATCACGTCCTTCCAACCG
CGTACACTGGGCCATTCCCGTTCCCGATGATGACTCGCAGACTGTCTACG
TCTGGTTAGATGCTTTAGTCAACTATCTCAGCTCTGTGGGATATCCAGAT
GAAAAGTTGTCTGCCCACTGGCCACCGGCGCAGCAAGTGATAGGGAAGGA
CATCCTCAAGTTCCATGGCATTTACTG
MXO03820.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:53:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31322-PA | 1749 | Aats-met-RA | 1..869 | 9..877 | 4320 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-met-RC | 4314 | CG31322-RC | 85..953 | 9..877 | 4330 | 99.9 | Plus |
| Aats-met-RB | 2337 | CG31322-RB | 85..953 | 9..877 | 4330 | 99.9 | Plus |
| Aats-met-RA | 1862 | CG31322-RA | 85..953 | 9..877 | 4330 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14258963..14259386 | 806..383 | 2120 | 100 | Minus |
| 3R | 32079331 | 3R | 14259467..14259749 | 383..101 | 1415 | 100 | Minus |
| 3R | 32079331 | 3R | 14259814..14259907 | 102..9 | 470 | 100 | Minus |
| 3R | 32079331 | 3R | 14258825..14258897 | 877..805 | 350 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:58:46 has no hits.
MXO03820.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:53:36 Download gff for
MXO03820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31322-PA | 1..869 | 9..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:55 Download gff for
MXO03820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-met-RA | 80..953 | 1..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:51 Download gff for
MXO03820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-met-RA | 80..953 | 1..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:51 Download gff for
MXO03820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14258825..14258895 | 807..877 | 98 | <- | Minus |
| 3R | 14258963..14259385 | 384..806 | 100 | <- | Minus |
| 3R | 14259467..14259747 | 103..383 | 100 | <- | Minus |
| 3R | 14259814..14259911 | 1..102 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:55 Download gff for
MXO03820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10084547..10084617 | 807..877 | 98 | <- | Minus |
| arm_3R | 10084685..10085107 | 384..806 | 100 | <- | Minus |
| arm_3R | 10085189..10085469 | 103..383 | 100 | <- | Minus |
| arm_3R | 10085536..10085633 | 1..102 | 96 | | Minus |
