MXO03821.5prime Sequence
859 bp (753 high quality bases) assembled on 2007-07-18
> MXO03821.5prime
CAGTCGACATGCGGATACGCGAAAAACGCAAGTTGCAGAGGGAGCTGAGG
GTGGAGAAGCGCGTGGAGAGGGAGAAAAAGGAGCACAAGGAGGCCTCCAA
GACGCAGGACAACAACAACAAGGCGAAGGCCACTGACACGGAGGTTCTCA
CACCAGCTCCTGCGCCTGCGCCTGCTCCACCAGCAGCACCCACTTCGACT
GCATCACCCACACCCACTAGCACGCACACCCCCAGCCTGCCGGCCGCCGA
GAAGGTGGCCTTCGACAATCGCATCAAGCGCAAGAATGTCCTGGCCCTCA
ACGAAAAGGTTGCTGCTCTGCGGGAATACGATCGGCTGCCGGTTTATAAG
CACGTTGGCCGGCTGTTCAACTGCAGCCCAGATCAGATCAAGCGGATCGT
GCAGCAGCGCGCTGAGATTCTGAACGCGTGGGATCAGCGAACCCGCAGGA
GCCAGGACGCCAAGACCATGGAGACGAAGACCGTCAGGGTCTCGATGTTG
GGCAAGGCCGTGTACGATTGGATACGCCGCATGATGTACTACAAGGACTT
CAGCATCTCCGACGGACTCATCCAGAAGATGGCGCTGCAGTTCAAGAGCT
CCATGAACCTGGCACATTTCTTTCCGCACCAGGAGTGGTGCGACAAGTTC
AGACGCACCTACAGCATCCAACACAGCGACACCAGACTGTTGAAGATAGG
CTACACGCAGGGCTACTCGGTGCAGATCAAGGACATCGTCAAGGACGTCA
TGTCGGAAAGCATGCCGGAAAGTGGGCCACGGAACGGCGAGGAGGATGAC
GAAGAGGTCAGCTTGGGCAGCCCGGTGAGCAGCCATCCCCGCAGCTATGT
AGAAGACGA
MXO03821.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:53:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3371-PA | 1746 | CG3371-RA | 1..851 | 9..859 | 4255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ebd1-RA | 2329 | CG3371-RA | 403..1253 | 9..859 | 4255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 683961..684693 | 859..127 | 3665 | 100 | Minus |
| 3L | 28110227 | 3L | 685027..685147 | 129..9 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:45:23 has no hits.
MXO03821.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:53:41 Download gff for
MXO03821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3371-PA | 1..850 | 9..858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:07 Download gff for
MXO03821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebd1-RA | 397..1252 | 1..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:05 Download gff for
MXO03821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebd1-RA | 397..1252 | 1..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:05 Download gff for
MXO03821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 683962..684691 | 129..858 | 100 | <- | Minus |
| 3L | 685028..685153 | 1..128 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:07 Download gff for
MXO03821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 683962..684691 | 129..858 | 100 | <- | Minus |
| arm_3L | 685028..685153 | 1..128 | 96 | | Minus |
