MXO03822.5prime Sequence
879 bp (815 high quality bases) assembled on 2007-07-18
> MXO03822.5prime
CAGTCGACATGAGTGCCAGCGGCAAAGGCGGTTACAAGACGCCGCGGAAG
GAGAACCTCATGTCCATTGAGAACCTCACCAATGCGGAGGAGGAATCCGA
GGACTTGAACACGGCAATGGTTGGGAATGCAGTGGAATCTCAGCCCAAGG
TCACCAGTCGGCGTTCCACCCGACGTCCAAGTCCCACCAAGAAATACCAG
GCGTACCAGAAGGAAAGCAATGGAAAAGGCCAGGAAGAGCGAATTGTTGT
GAACTATGTGGAAATGTCCGATGAACGGAGCAGCGATGCGGAGGATCAGG
AAGAAGAAGAAAGCATCGAGGAGTCGGAAAATGCTGCCCGTCCCGCTGCC
AAGGATCTGCATCTCATCCAATCCGAGTACAATGTGGCCGGCACCAGCAT
GTTTGGCTTCAATACGCCCAAGAAACGCGATGCCATGGCACTGGCCGCCC
TAAATGCCACGCCCTGCACGCCCAAGACCCCAAAAACGCCGCGTTTGGGT
GTCAAGACGCCGGATACGAAGCGCAAGAAGTCCATGGATCAGCCAAAGAC
TCCCGCCCATGTGCGCACCCGCGTCAAGAAGCAGATTGCCAAAATAGTGG
CCGACTCAGATGAGGATTTTTCTGGAGATGAAAGCGATTTCCGGCCCAGT
GACGAGGAATCCTCCTCCAGCAGCAGTAGCAGCGATGCTGGCAACTCCTC
TGACAACGACGCCGCCGATGATGAGCCCAAAACGCCCAGTAGAGCCCGCC
GTGCCATTGTAGTCCCCGTTCTGCCGAAAACTCCATCGGCAGCCCGCCTG
CGACAATCGGCGAGGGCGAAAAAATCGAATGAGTTTGTGCCCGAGAGCGA
TGGTTACTTTCACTCCCATGCCAGCAGCA
MXO03822.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:53:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3041-PA | 1857 | Orc2-RA | 1..871 | 9..879 | 4255 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc2-RA | 1995 | CG3041-RA | 65..936 | 8..879 | 4300 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13965007..13965581 | 8..582 | 2830 | 99.5 | Plus |
| 3R | 32079331 | 3R | 13965650..13965946 | 583..879 | 1470 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:50:00 has no hits.
MXO03822.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:53:46 Download gff for
MXO03822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3041-PA | 1..870 | 9..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:18 Download gff for
MXO03822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc2-RA | 58..935 | 1..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:41:48 Download gff for
MXO03822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc2-RA | 58..935 | 1..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:41:48 Download gff for
MXO03822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13965000..13965581 | 1..582 | 98 | -> | Plus |
| 3R | 13965650..13965945 | 583..878 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:18 Download gff for
MXO03822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9790722..9791303 | 1..582 | 98 | -> | Plus |
| arm_3R | 9791372..9791667 | 583..878 | 99 | | Plus |
