MXO03824.5prime Sequence
864 bp (762 high quality bases) assembled on 2007-07-18
> MXO03824.5prime
CAGTCGACATGTTTTCCACCACCACACACTCCGTGCCCTACCTGTACCTA
GGCAACTTCAGCAGAAAGCCGCACTACTACTCCGTTAATCGAACCAAGCT
GCACGGGAGCGCGGGAGCTGCCCGGTTGTCCAAGTCCACGTCCACGTCCA
GCCGGAGTCATGACCTAGTGCTCGACCTGCGGAACCTGCTGAGCCGTTCG
AGCGCCAGTATACAGGGCATGGTGGAGAGGGCGGCTCGACTGAATGGCAT
TCTCGACCGGCGGCTGGTCGATGATGTGCTGGCCAAGGTGACGAGCATGC
TGCCCTCCATGCGCGATGTCCGAGTCACGTTGGAGGAGTCGGCCACACAG
ATCGGTCGTGTCCAGCTGCAAAATTATCAGTTCGAAGTTTCGCTAACCGG
TGCAGCAGGTTCCGTGCCCACAGGCGCCAATGTCAAGGTGATTCCAACTA
TTACACCAGGTCTTCTTCGTCCGCTCTTCTCACAACAACAGCTAAATCAG
ATACGTGGCTTTAAGACGGATCGTTCCATTGAGGCGGAACAAAAGCGCAA
TCCCACAATGACCTCCCGACTAAAGAATGCTCTGGCCAACTCGCCCCAGC
GTCTGGATGGGGACACACCCCTTCAGGCTGAAAAACTGAGACGGCTGCTG
GCCAAATCCGAAGAGCATGGATTTAATAAAGCCGAGAGCCTGACAATTGC
CTTTGCCGAGGGCTACTTGGCCGCCGCTAACTCGGAGGACTCTCCAAAAT
CAGGAAAAACTATGAAATATCTGAAGACTATCGTCGTTATCGTCGTGATC
TTGGGCATTTTCCTGAGCTTCTTTACAACCCTCAATGGATCCGTATTTCG
CATACAACTGGGGC
MXO03824.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:53:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3499-PB | 2211 | CG3499-RB | 1..854 | 9..862 | 4170 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3499-RB | 2503 | CG3499-RB | 107..960 | 9..862 | 4210 | 99.5 | Plus |
| CG3499-RD | 2940 | CG3499-RD | 306..1168 | 9..862 | 4110 | 98.5 | Plus |
| CG3499-RC | 2515 | CG3499-RC | 107..972 | 9..862 | 4070 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22885414..22885812 | 433..35 | 1995 | 100 | Minus |
| 2R | 25286936 | 2R | 22885053..22885243 | 684..494 | 955 | 100 | Minus |
| 2R | 25286936 | 2R | 22884908..22885000 | 776..684 | 450 | 98.9 | Minus |
| 2R | 25286936 | 2R | 22884720..22884795 | 850..775 | 335 | 96.1 | Minus |
| 2R | 25286936 | 2R | 22885297..22885356 | 493..434 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:23:55 has no hits.
MXO03824.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:53:55 Download gff for
MXO03824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3499-PB | 1..855 | 9..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:01 Download gff for
MXO03824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3499-RB | 107..961 | 9..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:21 Download gff for
MXO03824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3499-RB | 107..961 | 9..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:21 Download gff for
MXO03824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22884720..22884793 | 777..850 | 96 | <- | Minus |
| 2R | 22884908..22885000 | 684..776 | 98 | <- | Minus |
| 2R | 22885054..22885243 | 494..683 | 100 | <- | Minus |
| 2R | 22885297..22885356 | 434..493 | 100 | <- | Minus |
| 2R | 22885414..22885811 | 36..433 | 100 | <- | Minus |
| 2R | 22885916..22885942 | 9..35 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:01 Download gff for
MXO03824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18772243..18772316 | 777..850 | 96 | <- | Minus |
| arm_2R | 18772431..18772523 | 684..776 | 98 | <- | Minus |
| arm_2R | 18772577..18772766 | 494..683 | 100 | <- | Minus |
| arm_2R | 18772820..18772879 | 434..493 | 100 | <- | Minus |
| arm_2R | 18772937..18773334 | 36..433 | 100 | <- | Minus |
| arm_2R | 18773439..18773465 | 9..35 | 100 | | Minus |
