MXO03825.5prime Sequence
887 bp (820 high quality bases) assembled on 2007-07-18
> MXO03825.5prime
CAGTCGACATGAGCAAGATTCCAGGCAGCAATCTGGAGTTCGTCCGCGAG
GAGGACTTCGTGGAGTACTACATCTTTCCCAAGATCCCCGACAACGTACA
GGATGAGGGCGCGCTGCGCAAACTGATGCTTCAGATCCGCAACGAGATCT
CGGCCATTGTAAGGGAAAAGTCCTTAGAGCGCAGCTATCTGTGGCACAAG
GACGAGTTTCAGCTTCAGGTGAGGCTGGGCGGCGCCGAGGAGCGCCTGCT
GAACGAGGAGACAAACCCGGAGGAGGAGGCGGAACTGGGCGACCTCCCAC
CGCACTTCCACGGCGTAACCCACTATGGCGACAACATCAGCGACGAGTGG
TTCGTTGTCTATCTGCTCACGGAGATCACACGTGCACGCGGCGACTGCAT
TGCACGGGTGAGCGATTCGGATGGCGAGTTCCTGCTCATCGAGGCGGCGG
ACGCCCTGCCCGACTGGGCGTCTCCGGAAACGTGCGAGCAGCGCGTTTAT
CTGGTCGGTGGTCACCTGCAGCTTCTCCAGAACTCCGCCGCCAGCAGCCA
GGACAAGCCACTGACCATGGCCATGGCNTGTGCAACGTATACGAATGAAT
CCCACCCTGTACCGCTGCTCGCAGGAGATACAGTCGTGCATTGACGCGCG
GCTTAAGGAGTACCAGATCGCTCAGCCGCACTTCTCCATTCATCGCCAGG
TGCTGGAGCTCCCGCATAGCGCTGCACAGCTTCTGAAACAGAAGCCAAGG
CTGCTCTCCTCGGCGGTTAGGGCTTTCTGCGAGCGGGACTCGCTGGACAT
CAAGGCACTTCGCACCATGCGATATTTCCCACCGGAAGGCACACGCGTGC
GCACCAACGTGCGTTTCACCCGCTGTCTGTACGCCAT
MXO03825.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:53:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5714-PA | 2055 | ecd-RA | 1..569 | 9..577 | 2845 | 100 | Plus |
| CG5714-PA | 2055 | ecd-RA | 570..878 | 579..887 | 1495 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ecd-RA | 2204 | CG5714-RA | 83..960 | 9..887 | 4340 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2264825..2265423 | 887..288 | 2920 | 99.5 | Minus |
| 3L | 28110227 | 3L | 2265495..2265775 | 289..9 | 1405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:27:17 has no hits.
MXO03825.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:53:59 Download gff for
MXO03825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5714-PA | 1..878 | 9..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:53 Download gff for
MXO03825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ecd-RA | 80..960 | 2..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:59 Download gff for
MXO03825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ecd-RA | 80..960 | 2..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:59 Download gff for
MXO03825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2265496..2265778 | 2..288 | 98 | | Minus |
| 3L | 2264825..2265422 | 289..887 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:53 Download gff for
MXO03825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2264825..2265422 | 289..887 | 99 | <- | Minus |
| arm_3L | 2265496..2265778 | 2..288 | 98 | | Minus |
