MXO03826.5prime Sequence
878 bp (688 high quality bases) assembled on 2007-07-18
> MXO03826.5prime
CAGTCGACATGATGAGACAACGGCTTAGCGTTCTGCTCCTTCTGCTCCAC
CTTGGCTGTTTAACTTTGGCATGGGCAAGCAGCAGGCACTTCTGTGGCGA
CACTTCCGGCCGTGACATCTGCAACGATGGCCGCTGGGATGGCCATCAGC
GCCAGGACGATTACGATGAGCACATGGTTTACAGACAAGGCGCGGCGGAG
AGTCAGAGGAGAGACCGCGTAGATTCAGTGGCGCGTGATGATCGCGGCAA
GGAAAGGCGCGAGGAAACAAGAGTTCGGTTGGACTCATCCCTGCGACTTG
AGGCTCGTGAAGCTCGCAATGAGCGACGTGAAACCCGAGAAGAGCGTGTA
CAGCCACGCGAAACTCGCGAAGTTCGAGTGGACCGACGTGCAGCTCGTGA
AGATCAACTAGATGCTCGCGAAGCTCGTGATGAGCGACGAGAAGCTCGGG
AAGAACGAGTACAGGCACTCGAAACTCGTGAAGCTCGAGTGGACCGACGT
GAATCTCGTGAAGATCGAGAAGACCGACGTGAATCGCGTGCAGATCGAGA
AGACCGACGTGAATCTCGTGAAGATCGATTGGAGGGTCGGGAAGCTCGCG
TCCAACGAGTGGAGCAACGCGAAGCTCGTGACAATCAAGTTGAGCTCCGT
GAAATTCGTGAGATCCGAGAACATCGACGTGTAACTCCAGAAGAACGAGT
CGAGCAACGCGGCATCCGTGAGGACCGTGTTGAGCGACATGAAGCTGACG
AAGGACAACGAGATACTCGTAAGATGGAGCGACGTGNGGAGCGCGAATCG
GACAGGCGTGACTTCGAAACTCGGCGACTAGCGGCGAACGAAAGACGAGT
TGAACGCCGAGAAAAACGCGAAATGTCC
MXO03826.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:54:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12239-PA | 1953 | CG12239-RA | 1..870 | 9..878 | 4281 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12239-RA | 2343 | CG12239-RA | 103..972 | 9..878 | 4309 | 99.7 | Plus |
| CG12239-RA | 2343 | CG12239-RA | 390..499 | 407..516 | 295 | 84.5 | Plus |
| CG12239-RA | 2343 | CG12239-RA | 501..610 | 296..405 | 295 | 84.5 | Plus |
| CG12239-RA | 2343 | CG12239-RA | 565..642 | 501..578 | 270 | 89.7 | Plus |
| CG12239-RA | 2343 | CG12239-RA | 595..672 | 471..548 | 270 | 89.7 | Plus |
| CG12239-RA | 2343 | CG12239-RA | 509..612 | 475..578 | 190 | 78.8 | Plus |
| CG12239-RA | 2343 | CG12239-RA | 569..672 | 415..518 | 190 | 78.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5792242..5793111 | 9..878 | 4309 | 99.7 | Plus |
| X | 23542271 | X | 5792529..5792638 | 407..516 | 295 | 84.5 | Plus |
| X | 23542271 | X | 5792640..5792749 | 296..405 | 295 | 84.5 | Plus |
| X | 23542271 | X | 5792704..5792781 | 501..578 | 270 | 89.7 | Plus |
| X | 23542271 | X | 5792734..5792811 | 471..548 | 270 | 89.7 | Plus |
| X | 23542271 | X | 5792648..5792751 | 475..578 | 190 | 78.8 | Plus |
| X | 23542271 | X | 5792708..5792811 | 415..518 | 190 | 78.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:02:38 has no hits.
MXO03826.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:54:03 Download gff for
MXO03826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12239-PA | 1..870 | 9..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:00 Download gff for
MXO03826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12239-RA | 98..972 | 1..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:33 Download gff for
MXO03826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12239-RA | 98..972 | 1..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:33 Download gff for
MXO03826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5792237..5793111 | 1..878 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:00 Download gff for
MXO03826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5686270..5687144 | 1..878 | 99 | | Plus |
