Clone MXO03828 Report

Search the DGRC for MXO03828

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:38
Well:28
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG10859-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO03828.5prime Sequence

833 bp (799 high quality bases) assembled on 2007-07-18

> MXO03828.5prime
CAGTCGACATGGGAACCTTGGGCAATCAGTTCATCCTCTCGCGGGAGCGT
CGCCGGTTCGGGAGGCAGTGCCTCTTCACAGACCGCAACGAGATGATCCT
CAGTGTGCAGCCGAGTGGACGGTTGCGCCTCAAGTACATACTGCGCAATC
CGATCAACGAACGGACCCAGCTGAGCGAACAGTATGCAGCATCTTCAGTG
TTGACACACAACGTGACCCTGGATTCCCATGGCTTGAATCACTACGAAGG
CGGCTGGAACGTCAAGGAGGTGAACATTATGGACGAGGAGTCCACAATGC
GCTATCGCAAAAAAGTCGAGCGTGATGACTCCTGGGGCATCGAGGTGAAC
CAATTGATGCACGCCGCAATGGACATCAGTTCGGCCAACAATGCTGTCAA
CATCTACGAGGACTTCTTTGTGGATCTACCGGAGGATTTGGGCCGCGGCA
TCAGCATGAAGATCGCTGCCAGGGGTACCCATGTCTTTCATGATCTGTGG
ATCCCATCGCGTAGGCTGATGACGTGCGAATGGCTAAACAACGATCCCAA
TCAGTTTCTCCTGTTCTATTCCAAATCGAATGAGCCTGACACCGCGACTA
CACAAAACAGCTAAACACGCTGCCCGATTTTGGCAACGATAATCCGCATG
CATTCTACATTTGGAACTTGGATGATGCCACCCGACCGGCTGCCCATTAC
GATTCTAGGAGAGTCGTACGGGTTGCCAAGGTGTGCCTGCGGGATGAGAG
CTACATGGTGGGTGGACTACAGGAGGGTCAGGTCGGCTTCTGGCTAACCG
AGAACAGGGTGGTCCCAAGAGCATGTGTCCCCT

MXO03828.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:54:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10859-PA 1884 CG10859-RA 1..566 9..574 2830 100 Plus
CG10859-PA 1884 CG10859-RA 586..795 596..805 1050 100 Plus
CG10859-PA 1884 CG10859-RA 796..824 805..833 145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10859-RB 1989 CG10859-RB 24..847 9..833 4055 99.6 Plus
CG10859-RA 2209 CG10859-RA 244..1067 9..833 4055 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13397598..13398421 833..9 3980 99.6 Minus
Blast to na_te.dros performed on 2014-11-28 21:45:29 has no hits.

MXO03828.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:54:08 Download gff for MXO03828.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10859-PA 1..824 9..833 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:12 Download gff for MXO03828.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10859-RA 244..1067 9..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:07 Download gff for MXO03828.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10859-RA 244..1067 9..833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:07 Download gff for MXO03828.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13397598..13398421 9..833 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:12 Download gff for MXO03828.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13397598..13398421 9..833 99   Minus