MXO03833.5prime Sequence
917 bp (863 high quality bases) assembled on 2007-07-18
> MXO03833.5prime
CAGTCGACATGACACCTAAGTCGATCCAAGATGACACCTATGTGGAGCAG
TTCATGAAGTACAACCTAAATGTCATGCACCAAATGACTAACTTCACTAC
AATGGTAGCGAAGAGCACGACCAGATCCCGCACGCGGTCTAGTGTTCGGG
CCGGAATAGGCGGCAATAAGCAGTCCATTGACGACCTGATGAACGGGATA
CTTTATGAAACTATTAACTGGGAACCGTACAGCACTGTTGAGGCTCTCGA
AGAGGCGTACGAGCCAAAGCCGTATACCAAGTCCTTTTTAAAGATCACCT
TACGCAAGTCTGACTTCTTCGAAATTCACAGCCAGACGCAGACGACGGTG
GCCAAGGGATCGCCCGAGGGCGACGATGCGGAGCGAGACAACCGAAACTA
CGAGTATCTGACAATAGGGAAAGGCAAAATTCGCCGGCGCTCAGACAATG
ACGCTCAGACAGATACTCTGCTCTTCACCACTCGGGCAGTCAACACCATC
CTCATAACCAAGGCCACCGTCAGCTCTTACGTTTCCAACTTTGAGATGTA
CGACACGCTGAACAATATCACCAAGGGAGTTCGCAACAGCCACTATGAGT
TCGGTAAAGGACCTGACCTCGGCTCTAGCGCAGACGGAGGATGCGGATAC
CTTTGAGGACGACGAGGCCGTTGCCGAAAAAGACAAGGTCAGCAGCCAGA
TAGAGCGCCTGTTCCGGAGCCCCGAGTTTCGCAACGCCATCATGTACATG
GGCCGCACGCTCTCGAGCAACACAAACGAGGCGGGGTTACGACGCTTCCG
TAACTTTGACCAGGTGGAACGCTGGAACGCGGAGGCCGAGTACGTCTACT
CGATGAACTTGCTCTTTCNGCTGGTACCGGAGCCCAGCAAAGACGAGCGC
AAAGCCGTAAGCGACAT
MXO03833.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:54:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7051-PB | 2055 | CG7051-RB | 1..568 | 9..576 | 2840 | 100 | Plus |
| CG7051-PA | 2295 | CG7051-RA | 241..808 | 9..576 | 2840 | 100 | Plus |
| CG7051-PB | 2055 | CG7051-RB | 567..908 | 576..917 | 1666 | 99.4 | Plus |
| CG7051-PA | 2295 | CG7051-RA | 807..1148 | 576..917 | 1666 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dic61B-RB | 2642 | CG7051-RB | 459..1366 | 9..917 | 4494 | 99.7 | Plus |
| Dic61B-RA | 2616 | CG7051-RA | 433..1340 | 9..917 | 4494 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 151072..151791 | 917..197 | 3529 | 99.6 | Minus |
| 3L | 28110227 | 3L | 151848..152036 | 197..9 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:13:42 has no hits.
MXO03833.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:54:23 Download gff for
MXO03833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7051-PA | 232..1148 | 1..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:26 Download gff for
MXO03833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic61B-RA | 424..1340 | 1..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:33 Download gff for
MXO03833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dic61B-RA | 424..1340 | 1..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:33 Download gff for
MXO03833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 151072..151790 | 198..917 | 99 | <- | Minus |
| 3L | 151848..152042 | 1..197 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:26 Download gff for
MXO03833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 151072..151790 | 198..917 | 99 | <- | Minus |
| arm_3L | 151848..152042 | 1..197 | 97 | | Minus |
