MXO03834.5prime Sequence
854 bp (807 high quality bases) assembled on 2007-07-18
> MXO03834.5prime
CAGTCGACATGAAAGCTCTGGAAGGTTTCACTATTCTTCTCGCATTAGTG
GGTGTTATTCCCCGGATCGAGGGCTGCATTAGGGTCCCACCGGGAGTCAC
AGCAGCCAAGTCACCGGTGGATGATAACTATGTGCTGTCCGTAAACGGAA
ATACGCAGAGTTATGTGCCCGGTCAAAGGTATAATGTTAGCCTCAGTGCA
TTTTCTGGCTTGTCCTTCATTAGCTTTATGCTGGCCCTGGATTTGGAGAG
TGGTGACGGCGATGGTGACGCCAATGCCCTGGGCACCTGGGAGATCGCCG
ATCTCGCCGAGACCCGTTTCAGTCCGCGCTGCCCAAATCTTGTCGAGAAT
ACCAACACGAACGTGAAGACACGCGTGGATGTGTTCTGGGTGGCTCCATC
GAGTCCGGGACAGGGCTGCATCCTGCTGAGGGCTACGGTGATGCAGCATC
GAGATGTGTGGTTCATGGATGATGGCTTCCTTACCAAGCGTATGTGCGAG
GAGGAGGTGGACGACATTGACACCCAGCCCAGCATCGTGGATCCGTGCTG
TGCCTGTGACGAGGCCAAATATGAAGCTTACCTTCGAAGGCAAGTGGGTC
GCGTCACACACATCCCAAGGACTTTCCAGCGAATAGCTGGCGCACCAGAT
TCAGCGATATCATTGGTGCCTCGCACACACTGGACTACAGATTCTGGCAG
TATGGAGAGCTGGCCAGCGAGGGGCTGCGTGAGGTGGCGGAGCATGGCTC
CACAAGGACCTTGGAGAGTGAGCTGAAGGATCAGAGCGAACACATTCGCA
CGATCATCAAGGCAAGGGGCATTGCCTATCCGAATGTTACGGGCAAAACA
TTTG
MXO03834.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:54:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17739-PA | 2622 | CG17739-RA | 1..566 | 9..574 | 2830 | 100 | Plus |
| CG17739-PA | 2622 | CG17739-RA | 587..844 | 597..854 | 1290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17739-RA | 2830 | CG17739-RA | 36..879 | 9..854 | 4180 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12307558..12307946 | 186..574 | 1945 | 100 | Plus |
| 2R | 25286936 | 2R | 12307999..12308277 | 575..854 | 1350 | 99.6 | Plus |
| 2R | 25286936 | 2R | 12307288..12307465 | 9..186 | 890 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:01:29 has no hits.
MXO03834.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:54:28 Download gff for
MXO03834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17739-PA | 1..844 | 9..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:03 Download gff for
MXO03834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17739-RA | 29..879 | 1..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:09 Download gff for
MXO03834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17739-RA | 29..879 | 1..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:09 Download gff for
MXO03834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12307281..12307465 | 1..186 | 97 | -> | Plus |
| 2R | 12307559..12307947 | 187..576 | 99 | -> | Plus |
| 2R | 12308001..12308277 | 577..854 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:03 Download gff for
MXO03834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8194786..8194970 | 1..186 | 97 | -> | Plus |
| arm_2R | 8195064..8195452 | 187..576 | 99 | -> | Plus |
| arm_2R | 8195506..8195782 | 577..854 | 99 | | Plus |
