MXO03835.5prime Sequence
843 bp (693 high quality bases) assembled on 2007-07-18
> MXO03835.5prime
CAGTCGACATGATGTCCAGTCCTCGCCAAAACGCAAGTGGCAGCGAGTTT
GAGACCTATGACATACCCAAGCCGGCCACGCCCGTTCCGCTGAACTACGA
CAGTCCCAGAAGCGGTCTTCCGAAGGCTTCTAACTCTACAACGACCTCCA
GCTCCAGCCTAGGCACCCGGTTTGAGACACTCAAGAGCGTGGCCGCATCC
ATTGCGGAGGAGTCTTACGATGTGCCACGACCCCTGATCTTAGGCAGCAA
CCAGCTCCAGCAGCAAATGTCACAGATGACGCCAAGCAGTTCCGCCTCCT
CACTGCTGACCAGCGACAGCCTCTCCCTGAGCTTTTCCAGCTCGAACCGT
TCATCGCTGGCCAACATGCCGGATTACGACATCCCTCGACGAAATCCGCT
TCCTGTGCGCCGTCAACAAAGTGGGCTGACCTACGACTTTCCGCTGCCTC
CGTTGCAGGAGCAGGTTCCGCGGGTGCTGTGCACACCCTCTACCGTCACC
ACTACCAAAGAACTGCCTCTAGAGCTCTCCTCCGCACTAGAAACACTCGC
AAAGCTGCAACTGCAGACTACTGCGGCCATTAATCGATTGCTAAGTTTCG
TAGTACCCAATTGGCGCACCCGCGCTCAACTCGAGCCGGCCATCATGGAT
CTGAAGCTGGCCGCCCTGCGTCTGCGCACAACACTCCACGACCTGGCAGA
GTTCGGGGAGGGAGCCCTGGGAAACGCCACGCGTTCGGAGGACCGAAACC
TGGCCCTCAAGCTGCGGCCCTTGGTGCGGGCTTTGCGAGATGCCAACAAG
CTGATTCACGACTCTTCCGAATCCCTCGATGCCCAGGGAGCCT
MXO03835.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:54:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1212-PA | 2382 | p130CAS-RA | 676..1510 | 9..843 | 4175 | 100 | Plus |
| CG1212-PB | 1707 | p130CAS-RB | 1..835 | 9..843 | 4175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p130CAS-RF | 2629 | CG1212-RF | 314..1148 | 9..843 | 4175 | 100 | Plus |
| p130CAS-RE | 2585 | CG1212-RE | 270..1104 | 9..843 | 4175 | 100 | Plus |
| p130CAS-RD | 3292 | CG1212-RD | 977..1811 | 9..843 | 4175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 172202..173036 | 9..843 | 4175 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:58:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1c | 5443 | Rt1c RT1C 5443bp | 1702..1763 | 329..268 | 112 | 64.5 | Minus |
MXO03835.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:54:33 Download gff for
MXO03835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1212-PB | 1..835 | 9..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:01 Download gff for
MXO03835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p130CAS-RD | 977..1811 | 9..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:57 Download gff for
MXO03835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p130CAS-RD | 977..1811 | 9..843 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:57 Download gff for
MXO03835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 172202..173036 | 9..843 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:01 Download gff for
MXO03835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 172202..173036 | 9..843 | 100 | | Plus |
