MXO03836.5prime Sequence
874 bp (809 high quality bases) assembled on 2007-07-18
> MXO03836.5prime
CAGTCGACATGGGAAGTCAGTTAACCACTCCCNTTANTAAAAATGGTTAC
GAGTCGTCACGTACCGTAAAAAAGTCATCGAAGACAAGTCCACCTCGAAC
TACGTCACCGATTCAAATATTCGTGCCAGTCCCTCGCTTTACGGAACTGC
CGAGCGACTGCGTCGAACCGGATCCCCCGAGCCCCGCATCGACCATTCCT
CCAATGTGAGGGTGTCCTCGATGAAGCCGGCTTCCGCCAGGCGGGACAGC
TGGGACGTCATCAACAAGACGAAGCACATGCTCTCGCACAATTCGCTCGA
ATCGCTGGCGAACATGACCGAGAAGCAGCTGAACACGGAACTGCAATACA
ATCGCCCGGATTTGGACCACGAGACGCACCGGAACACCCAATACAACAAG
TTCGCCCTGCACAAGCAGCAGCAGCAGCAGTCGGACTATCGCCGGGATTC
CCCCGATGATGGAGAGCGCTACAAACCCAGTGCCATTACAGTCAAGTCAC
ATTCGAACAATACGTATACGGACAAGTCCGGTGGATATACGAAAACCGTT
AAGGAATCCAGCGAGCATGTGGTTACCGAGAGCAATGGCCATGGCCCCTC
CCCGGGCTATGGATACAGCTCCCTCTCCAGATTTCGACCCATAGACGGCA
ATGCCACTGGTGCCAGGGCCATTCGAGTGCAGGATATTCCGAATGGCTCT
ATTGGACGGCCTGTCGAGTTCGAGATCGATGGCTCGAGGGCGGGCTCCGG
CAATTTGGAGATCCTGGTCAACGGCGGGCGTGTCACCTCCTCGGTGCGCT
CGCTGGGAGGTCAGAGGTTCATAAGCAGCTTCACGCCGCACGAACATGGA
ACGCACACGGTGCAGATCACCTTC
MXO03836.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:54:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30092-PD | 8895 | jbug-RD | 2804..3594 | 84..874 | 3880 | 99.6 | Plus |
| CG30092-PB | 4869 | jbug-RB | 2804..3594 | 84..874 | 3880 | 99.6 | Plus |
| CG30092-PD | 8895 | jbug-RD | 2727..2800 | 8..81 | 207 | 90.5 | Plus |
| CG30092-PB | 4869 | jbug-RB | 2727..2800 | 8..81 | 207 | 90.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jbug-RN | 9391 | CG30092-RN | 2865..3732 | 8..874 | 4143 | 98.5 | Plus |
| jbug-RM | 9043 | CG30092-RM | 2517..3384 | 8..874 | 4143 | 98.5 | Plus |
| jbug-RF | 9430 | CG30092-RF | 2904..3771 | 8..874 | 4143 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22730310..22730743 | 474..42 | 2060 | 98.8 | Minus |
| 2R | 25286936 | 2R | 22729834..22730233 | 874..475 | 1970 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:50:04 has no hits.
MXO03836.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:54:37 Download gff for
MXO03836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30092-PB | 2740..3594 | 21..874 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:20 Download gff for
MXO03836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jbug-RF | 2917..3771 | 21..874 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:41:51 Download gff for
MXO03836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jbug-RF | 2917..3771 | 21..874 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:41:51 Download gff for
MXO03836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22729834..22730233 | 475..874 | 99 | <- | Minus |
| 2R | 22730310..22730743 | 42..474 | 98 | == | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:20 Download gff for
MXO03836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18617339..18617738 | 475..874 | 99 | <- | Minus |
| arm_2R | 18617815..18618248 | 42..474 | 98 | == | Minus |
