MXO03837.5prime Sequence
885 bp (773 high quality bases) assembled on 2007-07-18
> MXO03837.5prime
CAGTCGACATGGATGCGACGTGGGCAATGGAGCAGCTGCTGTCTGCAGTT
GAGATGGGAGGTAGCCACAGCGAGGCCACCACACCAACGGCCACGACCAC
CATATCGATCTGGAGCGCCCCCTCCGAGGGCAGTGGCTCTAGTTCCATGG
ACCCTGTCTCCTTTCGGTTCCACTTGGACGGGCAGCCTATACTGCCACCG
CTGATGACGAGCGCCAAGAAGCGCGAGGTGCAGCTGGCCCGCCAGATGGC
AGAAGCGCTGGAGAAGCGGTACCGCCTGGCCAGACACTCGGCGGGATCCG
ACATGGCCAGTAGGAGAAGTGTGTCACAGCTGCAGCAGACAGAAACGTTA
ATCTATGACAGCACACGGGGCCAGGCTCGTCCTCAGACTCTGGTCTTTGG
CAAACAGTTGCCCACCATACAGGTGGATCCTCCCACGCCTCAACCATTTG
TGAAATCAATAGAAAACACTTCCCCAAGGCGGCATAATCGCATTACCGAT
CGTATCCTGCAGTTCGAGCAGTCGGGACTGGGTAAGCTGCTGCCCAAAGT
TCCAGATAAGTGTATCCTGCGCACAAGTCCTGCGGTAGCCGAAGACCAGC
AGGATCAGGATACAAAGGACACAACGGCAAGGGAGCTCGGCAGTCCACTG
GCAGAACCAGCTAATTTTCAGCGTTCGAGAAGTTTCACACTAGAGGAGCC
CTCCCAGGTTCTCGTGGAGCACATGGAGAGGGAGGCCCTGGCTGTGAAAC
CCAGCCAGAGTTTGGCCAACTTCGAGAAGCAGACCATCGAGTCTCAGGCC
AAGCGGGTGAACCGTAGTGCAAGGAGTATTAGCAGCAAAATTAGCCACAA
CAGCTACAATAGCACCAGTAGCGCCGCAACCAAAA
MXO03837.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:54:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14617-PA | 1650 | CG14617-RA | 1..875 | 9..883 | 4350 | 99.8 | Plus |
| CG14617-PB | 2001 | CG14617-RB | 1..875 | 9..883 | 4350 | 99.8 | Plus |
| CG14617-PC | 1650 | CG14617-RC | 1..875 | 9..883 | 4350 | 99.8 | Plus |
| CG14617-PD | 2001 | CG14617-RD | 1..875 | 9..883 | 4350 | 99.8 | Plus |
| CG14617-PE | 1650 | CG14617-RE | 1..875 | 9..883 | 4350 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cp110-RH | 2320 | CG14617-RH | 274..1148 | 9..883 | 4360 | 99.9 | Plus |
| Cp110-RG | 2650 | CG14617-RG | 453..1327 | 9..883 | 4360 | 99.9 | Plus |
| Cp110-RE | 2919 | CG14617-RE | 343..1217 | 9..883 | 4360 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22483086..22483766 | 203..883 | 3390 | 99.9 | Plus |
| X | 23542271 | X | 22482841..22483026 | 22..207 | 915 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:50:08 has no hits.
MXO03837.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:54:42 Download gff for
MXO03837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14617-PE | 1..873 | 9..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:23 Download gff for
MXO03837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp110-RE | 338..1215 | 1..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:41:53 Download gff for
MXO03837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp110-RE | 338..1215 | 1..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:41:53 Download gff for
MXO03837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22482842..22483022 | 23..203 | 100 | -> | Plus |
| X | 22483087..22483764 | 204..881 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:23 Download gff for
MXO03837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21884678..21884858 | 23..203 | 100 | -> | Plus |
| arm_X | 21884923..21885600 | 204..881 | 99 | | Plus |
