MXO03839.5prime Sequence
864 bp (784 high quality bases) assembled on 2007-07-18
> MXO03839.5prime
CAGTCGACATGATACCGACAAGCGTCACCAACTCACCGCCGCCAGCGGGT
TTGGGCCAGAATGGAGCATCTGCCTCCTTGGGCTCGGCTACTGCGGCGGC
CGGAGGAGGGATGCTGTCCGGCTTGGGAATGGTGGCGGTCTCTGGATGTG
GGTCGGCAGGAACAGGAGCTCAGAATAACTACGGTTCCGTTGTGCTCGGC
TTGGCCTCGCTAATCCTCGAGGGCAGACCCATTGCCGACGATGAGTACCA
GCAGCAGACGGTGGGAGTAGTCGGTTCAGGAGCAGCAACAGCAGGATCTG
GGGGAGGACGCCTATCGCCACGACCCTCCACCTCCAGGGCGGCCATTAAC
ATCACAACGAATCCCTATGGTTCCATGGGAGGATCGGAAAATAGAGCCGT
CAATGGAAGTGGTTCGACTGGGTCGCCCAGCAGTAGTTCGCTAACCCACC
AGCGATGGACACAGAAGCTCTGCCAGCTGCGTCAGATTTCGCCGGCTGCC
CAGACGATGAGCGCCGAACCGGAGTTGGTTTCTTTGGCCATCAATGATCT
TAACAAGGATCATGGCAGATATATGAAATTGTACGACGTGTCATGCNTCA
ATCGANGCTGGTGGAACGGGTTTGGTTAGCAGTGCCGGCGGTGGAACCAA
CAATTCCAGTGCCGCCAGTTCGCCGGGCTCGAATTCATCGGACAACATTC
TCCACTCGCTGCAATCGCTGGCCACCACCTGCTTAAGAGGTGGACCTGCC
TTGGCACCGCCACCATCAGTTGAGTCAAGACCTCTGAATCTGGCCTTTCA
TTGGTCGGGTTTGGGGGGATCCGGTGGCCGAGGATTGGGATTTGGAGGAG
GAGCAGCAAGCATT
MXO03839.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:54:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9005-PA | 3894 | CG9005-RA | 1..558 | 9..566 | 2790 | 100 | Plus |
| CG9005-PA | 3894 | CG9005-RA | 595..852 | 607..864 | 1290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9005-RC | 5832 | CG9005-RC | 943..1795 | 8..864 | 4185 | 99.5 | Plus |
| CG9005-RB | 5982 | CG9005-RB | 722..1574 | 8..864 | 4185 | 99.5 | Plus |
| CG9005-RA | 5273 | CG9005-RA | 722..1574 | 8..864 | 4185 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11624341..11625193 | 864..8 | 4085 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:13:48 has no hits.
MXO03839.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:54:47 Download gff for
MXO03839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9005-PA | 1..852 | 9..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:28 Download gff for
MXO03839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9005-RA | 713..1574 | 1..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:37 Download gff for
MXO03839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9005-RA | 713..1574 | 1..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:37 Download gff for
MXO03839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11624341..11625197 | 1..864 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:28 Download gff for
MXO03839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7511846..7512702 | 1..864 | 99 | | Minus |
