MXO03840.5prime Sequence
861 bp (761 high quality bases) assembled on 2007-07-18
> MXO03840.5prime
CAGTCGACATGACAGCCGAACGAGGACCCCGCTCCCCGGGAACGGGGCAA
AAACTAAGGCTTAGAGCCACTGAGCCAATGCCACAGTGGACGGCCAAAAA
TCTGCACGCCCTGCTGGATCTGCCCGCGGCGATGGAACTGCGCCAAATTG
AGTTGATCTATCGGGCGGAGGGTAATGCAAATTTGGTGCTCGCCCTGCCG
CAATTTAAAAAAGTTTTACGTTTGCCAAAAATGATATCCAGCAGACTGCG
CCAGGCGGCGCACCAGCGGCACGAGCTGGCGGATGAGGTTGCTCGGCCGG
AAGGGCAGCGTGTCTCATCCGAAAGAGCTGGAACTGAAAATGCTGGCGAC
TTGACAATGCCGGATTTTATGGCTTATATCGGGATAATGCGCCGTCTATT
AGGAAATGAGTTTGTCTGCGGAGCGGATATTGTTGCCATACCAAAGGAAG
ACGATAGATTCTGGATAAACGAGCATATACGCGCCCAAAGACCGGTTTCG
CGTCTGGATAAGGAATTTGTGGGGCCATTCGGCCTGCTGCTGCCAGATGT
GACCCAATTGCCTGCCACGTTCGATGTTTTACTTGCCAATTTACAGGCAA
AGGGCACAACAGGAGATGAAAGTGGAGCTGCAGCGGGCGTAGGAGATGGC
GGTGGCGTTGGCCGTGGAGCAGGAACAAGGACGAAAAACAGGAGCGCTGT
CCGTCGTCTGGGCGATACATATGCCATCGAAATAAAACCCAAACAAGGCT
GGCTTCAGTTGGCAAGTGATGTCAACGATTTATTTGATTTAATGCCATCG
GGGGCAGTGAACAAGCCAAAGGAGACGACCTGNCATCAGGAGGAGAATGA
GCCCTCTGCCC
MXO03840.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:54:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30295-PA | 1866 | Ipk1-RA | 1..853 | 9..861 | 4171 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ipk1-RC | 2633 | CG30295-RC | 467..1320 | 8..861 | 4214 | 99.5 | Plus |
| Ipk1-RB | 2636 | CG30295-RB | 467..1320 | 8..861 | 4214 | 99.5 | Plus |
| Ipk1-RA | 2472 | CG30295-RA | 467..1320 | 8..861 | 4214 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20871671..20872005 | 8..342 | 1675 | 100 | Plus |
| 2R | 25286936 | 2R | 20875231..20875502 | 590..861 | 1289 | 98.2 | Plus |
| 2R | 25286936 | 2R | 20872539..20872692 | 342..495 | 770 | 100 | Plus |
| 2R | 25286936 | 2R | 20873650..20873752 | 495..597 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:01:36 has no hits.
MXO03840.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:54:52 Download gff for
MXO03840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30295-PA | 1..853 | 9..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:05 Download gff for
MXO03840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipk1-RA | 462..1320 | 1..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:12 Download gff for
MXO03840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipk1-RA | 462..1320 | 1..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:12 Download gff for
MXO03840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20871666..20872005 | 1..342 | 99 | -> | Plus |
| 2R | 20872540..20872692 | 343..495 | 100 | -> | Plus |
| 2R | 20873651..20873751 | 496..596 | 100 | -> | Plus |
| 2R | 20875238..20875502 | 597..861 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:05 Download gff for
MXO03840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16759171..16759510 | 1..342 | 99 | -> | Plus |
| arm_2R | 16760045..16760197 | 343..495 | 100 | -> | Plus |
| arm_2R | 16761156..16761256 | 496..596 | 100 | -> | Plus |
| arm_2R | 16762743..16763007 | 597..861 | 98 | | Plus |
