MXO03842.5prime Sequence
798 bp (531 high quality bases) assembled on 2007-07-18
> MXO03842.5prime
CAATCGACATGATTCCCTGAGTTTGCCTAAGCGCGGCCATTGTGCTCATC
CTGTGCCCCCTTCACACATCCTCACGCAGCTAGAGCAACGGTCTGATCTT
CTACCAACTGAAAACCCACCGACCCTACCTACCGCCCACGGTCAGTGTGT
CCAGGGGCCGAAATCTGGCCAGCGTCAAGTACTCCGAAAAGGGGTCCATC
TGGTCCACCTTTGGCCAGCCCTGCGAGTGCAGCGGACCCACCTGCGGATG
TTGCGCCGGAGGCAAGGTCGATCAGTACCGATTCAATCAGAAAGTGTGCG
CCAACGTGAGCTTCGTGCCGCATCTGGAGGAGGCCCAACTGGAGGTCTTT
CTTAATGGCAGGCCCTCCTCTAAATACGGAATCTCGGTGCGCAATCCGGC
GCCCTTCTGCATTCCCGTCATGATGGGTGTACCGATGGCCATGTGCGTCC
AAATGACCGACGTCACAGTGGTTGGGAACAACCTAAACATGTGCATGGAC
TTTGTGGTTCGGATGGCCACCACCGATCTCTTCGAGATGCATTTCCAGTG
CATGCGAATGGGTCTGGATGGTCTGCAGTATGTGGACAAGAATGGCAAGC
CCGTACTGCCTATGGGAGATGGTCAGAGCGACGATCCAGAGGAGTACGAG
TACGCCGAGCTGGAGGATCAACCGGAAGAGTATCCTTATCAAGAGGATGT
CAAGGAGGAGGCTCCATCCCAGGGCTATCAACCAGATAACAATCAGCAGC
AGAAGAATACAACACTGACCACTGATCATGTTAAAGAGGATGAGATGG
MXO03842.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:54:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8568-PA | 2280 | CG8568-RA | 255..790 | 263..798 | 2555 | 99 | Plus |
| CG8568-PA | 2280 | CG8568-RA | 1..251 | 9..259 | 1105 | 97.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8568-RA | 2647 | CG8568-RA | 215..1005 | 8..798 | 3745 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17450632..17451137 | 798..293 | 2470 | 99.2 | Minus |
| X | 23542271 | X | 17452043..17452329 | 294..8 | 1285 | 96.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:40:32 has no hits.
MXO03842.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:54:56 Download gff for
MXO03842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8568-PA | 1..790 | 9..798 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:17 Download gff for
MXO03842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8568-RA | 208..1005 | 1..798 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:03 Download gff for
MXO03842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8568-RA | 208..1005 | 1..798 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:03 Download gff for
MXO03842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17450632..17451135 | 295..798 | 99 | <- | Minus |
| X | 17452043..17452336 | 1..294 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:17 Download gff for
MXO03842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17344665..17345168 | 295..798 | 99 | <- | Minus |
| arm_X | 17346076..17346369 | 1..294 | 95 | | Minus |
