MXO03844.5prime Sequence
841 bp (840 high quality bases) assembled on 2007-07-18
> MXO03844.5prime
CAGTCGACATGATGGAGCATAGTCGGTGTCCTGGCCGTCGTGCTGCTGAT
CGCGACTGCTGTCGGTGCCCAGGATACTTCGTAGAACTATCTGCTCACCG
GTCACTCAACTCCGCTGGCCAGCAGCTTTGCCCACCAGTTCTTTACCTTG
GCCTCGCAAAGCGCTGAGCTCGCCAATAGGACGAACACCCAGGTGATTCA
AACCTACGAGGATCGCAACTACGACGATGAGCTCTGCGATCGGGATATCA
ACCTAATCAGGGATTCAATCAACAACTTGGAGGAGTGGGCACTGGAATTT
CCCGACACATGGGGTCGTTTGCCCATGGGTCTCTTCTGGGGACACACCAT
CAGCATGGGTCAGTACGAGGAGTGCGTAGCAGCTAGCTCTACCCACACCA
CAGAGATTCGTGGACAGTATTGCTTGGCTAGTTTGAACATAACTACGTTT
TATCAATCGGTTAAGAAACGCGGCGAAGAGTTCTCACGTATTAGCTATAA
GCAAACAGATCCGGAAGTCTTTGAGCTTGGCATTTGTGTTCCAAAGACAT
GCAGTGCTGCAAAGACCGAAAAATTGCTCAAGTACGCTATCACCCACTTT
TATGGACAGGATGTGATGGAATCAAACTACACAATGGTGACGGAAGCGCG
CTGCAAATACGATGCACCCATCGAGCTGCGCGGCATTGACATATTCGCAA
TCATTTTCTTCTCGCTGATCATCTTCTTCATGGTTGCCAGCAGTGTCTAC
GATTATATTCAGACCCGCAAAGGAGCCCCCAAAAAGCCACTGCTGATCGC
GTTTTCTGTACTGACAAATGCCCCCAAAATTTTCACCGTTA
MXO03844.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:54:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3106-PA | 2229 | CG3106-RA | 14..832 | 23..841 | 4045 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3106-RB | 2589 | CG3106-RB | 253..1084 | 9..841 | 4095 | 99.5 | Plus |
| CG3106-RA | 2443 | CG3106-RA | 108..939 | 9..841 | 4095 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9661022..9661424 | 701..299 | 2015 | 100 | Minus |
| X | 23542271 | X | 9662363..9662651 | 298..9 | 1355 | 98.6 | Minus |
| X | 23542271 | X | 9660881..9660954 | 775..702 | 370 | 100 | Minus |
| X | 23542271 | X | 9660750..9660817 | 841..774 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:50:11 has no hits.
MXO03844.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:55:01 Download gff for
MXO03844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-PA | 1..831 | 9..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:25 Download gff for
MXO03844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-RA | 108..938 | 9..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:41:56 Download gff for
MXO03844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3106-RA | 108..938 | 9..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:41:56 Download gff for
MXO03844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9660751..9660815 | 776..840 | 100 | <- | Minus |
| X | 9660881..9660954 | 702..775 | 100 | <- | Minus |
| X | 9661022..9661424 | 299..701 | 100 | <- | Minus |
| X | 9662363..9662651 | 9..298 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:25 Download gff for
MXO03844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9554784..9554848 | 776..840 | 100 | <- | Minus |
| arm_X | 9554914..9554987 | 702..775 | 100 | <- | Minus |
| arm_X | 9555055..9555457 | 299..701 | 100 | <- | Minus |
| arm_X | 9556396..9556684 | 9..298 | 98 | | Minus |
