MXO03845.5prime Sequence
798 bp (758 high quality bases) assembled on 2007-07-18
> MXO03845.5prime
CAGTCGACATGTCCTTCGCAGATGATAGCTATAGCTTTGGTCGCTGCTAC
GAGTATCAGCCCGATGATTGCAAATGGCAGGAGACAGGACCTANACCAGT
GGCCACAGCCGCCGTATTGGCCACAAACAGGGAATCATCCAGCAGCACCG
AGGGCCGCGAGTCCGCCGTTACTATGGAGAGAAACGATGCGGACATTAAC
TTTCAACGGGTCTCAATTTCGGGTGAGGACACCAGTGGCGTACCGCTCGA
GGATTTGGAGCGGGCCTCGACCCTGCTGATCGAGGCACTGCGCCTGCGTA
GCCACTACATGGCCATGTCGGATCAATCGTTTCCCTCGACCACGGCTCGA
TTCCTCAAGACAGTGAAGCTCAAGGATCGCATCAACAATCTGCCCGTCAA
GGAGGTGTCGGAATCTGCAGATGTCCATTTGAGACATTCGCCAATGAAGA
TTACGAATCCGTGGAACGTCGAGTTTCCCAATGACGAAGATTTCAAGATT
AAGCCCCTCAACGGAGTGTTTCACATTTACGAGAATGATGACGAAAGCAG
TGAGATCAAATCGAATATCCAGATATGAGCCAATTCGTAAACGACATGCA
GGTCATGTGCAATATGATTGCCGATGGGCCATTGAAATCCTTCTGCTATC
GACGTCTCTGTTATCTGTCGTCCAAGTATCAGATGCACGTGCTCCTCAAC
GAGCTGCGTGAGCTGGCTGCCCAGAAGGCGGTGCCGCATCGCGATTTCTA
CAACACCCGCAAGGTGGACACCCACATCCATGCCGCATCGTGCATGAA
MXO03845.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:55:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32626-PC | 2124 | CG32626-RC | 1..553 | 9..561 | 2671 | 99.2 | Plus |
| CG32626-PA | 2325 | CG32626-RA | 277..754 | 84..561 | 2371 | 99.7 | Plus |
| CG32626-PD | 2334 | CG32626-RD | 286..763 | 84..561 | 2371 | 99.7 | Plus |
| CG32626-PB | 1959 | CG32626-RB | 1..388 | 174..561 | 1940 | 100 | Plus |
| CG32626-PC | 2124 | CG32626-RC | 555..791 | 562..798 | 1185 | 100 | Plus |
| CG32626-PA | 2325 | CG32626-RA | 756..992 | 562..798 | 1185 | 100 | Plus |
| CG32626-PD | 2334 | CG32626-RD | 765..1001 | 562..798 | 1185 | 100 | Plus |
| CG32626-PB | 1959 | CG32626-RB | 390..626 | 562..798 | 1185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AMPdeam-RC | 3216 | CG32626-RC | 921..1711 | 9..798 | 3874 | 99.4 | Plus |
| AMPdeam-RJ | 2620 | CG32626-RJ | 393..1115 | 77..798 | 3549 | 99.4 | Plus |
| AMPdeam-RG | 2611 | CG32626-RG | 393..1106 | 77..798 | 3404 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13834815..13835150 | 411..76 | 1639 | 99.1 | Minus |
| X | 23542271 | X | 13832509..13832673 | 798..634 | 825 | 100 | Minus |
| X | 23542271 | X | 13832903..13833032 | 540..411 | 650 | 100 | Minus |
| X | 23542271 | X | 13832745..13832840 | 634..540 | 430 | 99 | Minus |
| X | 23542271 | X | 13835377..13835445 | 77..9 | 330 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:27:23 has no hits.
MXO03845.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:55:06 Download gff for
MXO03845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32626-PC | 1..789 | 9..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:55 Download gff for
MXO03845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32626-RC | 913..1711 | 1..798 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:02 Download gff for
MXO03845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AMPdeam-RC | 913..1711 | 1..798 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:02 Download gff for
MXO03845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13832509..13832673 | 634..798 | 100 | <- | Minus |
| X | 13832746..13832840 | 540..633 | 98 | <- | Minus |
| X | 13832904..13833031 | 412..539 | 100 | <- | Minus |
| X | 13834815..13835149 | 77..411 | 99 | <- | Minus |
| X | 13835378..13835449 | 1..76 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:55 Download gff for
MXO03845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13726542..13726706 | 634..798 | 100 | <- | Minus |
| arm_X | 13726779..13726873 | 540..633 | 98 | <- | Minus |
| arm_X | 13726937..13727064 | 412..539 | 100 | <- | Minus |
| arm_X | 13728848..13729182 | 77..411 | 99 | <- | Minus |
| arm_X | 13729411..13729482 | 1..76 | 93 | | Minus |
