Clone MXO03846 Report

Search the DGRC for MXO03846

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:38
Well:46
Vector:pMK33-CTAP-BD
Associated Gene/Transcripttrn-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO03846.5prime Sequence

869 bp (821 high quality bases) assembled on 2007-07-18

> MXO03846.5prime
CAGTCGACATGCAGCGAAACATGATGATCGCCTTCGTGGGCATCTGGTGC
ATTTTGGCCAGCATTGGTGTGGAGCCTGCGGCGGGCTTGGCCAATTGCCC
GCCCGGCTGTCAGTGCGATGATAATACCCTGGTGGTACAATGTGGCGAGG
GCCAGCTGGACGTGCTGCCCATTGCTCTGAATCCATCCATCCAGCGACTG
GTGATTAAGAGCAACAAGATCAAGACCATCGACTCGTCCATCCAGTTCTA
CGCGGAGCTGACCTTCCTCGATCTGTCCTCGAATCACCTGATGACCATTC
CGCAGCGCACCTTCGCCTATCAGAAGAAGCTGCAGGAGGTGCATCTGAAT
CACAACAAGATTGGGCAGATCAGCAATAAGACCTTCATTGGTCTGTCGGC
AGTTACTGTTCTGAATCTGCGTGGTAACCAAATCTCGGAACTTCACCAGG
GCACCTTTACTCCTCTCCTGAAGATCGAGGAGCTGAATCTGGGCGAGAAT
CGCATCGGCTATCTGGATCCCAAGGCTTTCGATGGACTCTCCCAGTTGCG
CATCCTTTATCTGGATGATAATGNCCTTGACCACCGTTCCCGATCCCGTG
ATCTTCCAAGCCATGCCCAGTCTGGCTGAGCTGTTCCTTGGAATGAACAC
CCTGCAGAGCATTCAGGCTGATGCCTTCCAGGACCTGAAAGGACTTACTC
GCCTGGAACTCAAGGGTGCCAGTCTACGCAACATCTCCCACGACAGCTTC
CTCGGCTTGCAGGAGTTGCGCATTCTTGATCTTTCCGATAATCGTCTGGA
TCGCATTCCCTCCGTGGGTCTCAGCAAGCTGGTTCGTCTGGAGCAGCTGT
CCCTGGGTCAAAACGATTT

MXO03846.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11280-PA 2214 trn-RA 1..565 9..573 2825 100 Plus
CG11280-PA 2214 trn-RA 566..860 575..869 1475 100 Plus
CG11282-PA 1623 caps-RA 175..248 144..217 145 87.8 Plus
CG11282-PB 1623 caps-RB 175..248 144..217 145 87.8 Plus
CG11282-PC 2247 caps-RC 175..248 144..217 145 87.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:11
Subject Length Description Subject Range Query Range Score Percent Strand
trn-RB 3365 CG11280-RB 586..1445 9..869 4280 99.9 Plus
trn-RA 3365 CG11280-RA 586..1445 9..869 4280 99.9 Plus
caps-RE 4841 CG11282-RE 1001..1424 83..506 545 75.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13115298..13116157 9..869 4255 99.9 Plus
3L 28110227 3L 13275802..13276225 83..506 545 75.2 Plus
Blast to na_te.dros performed on 2014-11-28 20:19:11 has no hits.

MXO03846.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:55:11 Download gff for MXO03846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11280-PA 1..860 9..869 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:49 Download gff for MXO03846.5prime
Subject Subject Range Query Range Percent Splice Strand
trn-RA 586..1445 9..869 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:01 Download gff for MXO03846.5prime
Subject Subject Range Query Range Percent Splice Strand
trn-RA 586..1445 9..869 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:01 Download gff for MXO03846.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 13115298..13116157 9..869 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:49 Download gff for MXO03846.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13108398..13109257 9..869 99   Plus