MXO03846.5prime Sequence
869 bp (821 high quality bases) assembled on 2007-07-18
> MXO03846.5prime
CAGTCGACATGCAGCGAAACATGATGATCGCCTTCGTGGGCATCTGGTGC
ATTTTGGCCAGCATTGGTGTGGAGCCTGCGGCGGGCTTGGCCAATTGCCC
GCCCGGCTGTCAGTGCGATGATAATACCCTGGTGGTACAATGTGGCGAGG
GCCAGCTGGACGTGCTGCCCATTGCTCTGAATCCATCCATCCAGCGACTG
GTGATTAAGAGCAACAAGATCAAGACCATCGACTCGTCCATCCAGTTCTA
CGCGGAGCTGACCTTCCTCGATCTGTCCTCGAATCACCTGATGACCATTC
CGCAGCGCACCTTCGCCTATCAGAAGAAGCTGCAGGAGGTGCATCTGAAT
CACAACAAGATTGGGCAGATCAGCAATAAGACCTTCATTGGTCTGTCGGC
AGTTACTGTTCTGAATCTGCGTGGTAACCAAATCTCGGAACTTCACCAGG
GCACCTTTACTCCTCTCCTGAAGATCGAGGAGCTGAATCTGGGCGAGAAT
CGCATCGGCTATCTGGATCCCAAGGCTTTCGATGGACTCTCCCAGTTGCG
CATCCTTTATCTGGATGATAATGNCCTTGACCACCGTTCCCGATCCCGTG
ATCTTCCAAGCCATGCCCAGTCTGGCTGAGCTGTTCCTTGGAATGAACAC
CCTGCAGAGCATTCAGGCTGATGCCTTCCAGGACCTGAAAGGACTTACTC
GCCTGGAACTCAAGGGTGCCAGTCTACGCAACATCTCCCACGACAGCTTC
CTCGGCTTGCAGGAGTTGCGCATTCTTGATCTTTCCGATAATCGTCTGGA
TCGCATTCCCTCCGTGGGTCTCAGCAAGCTGGTTCGTCTGGAGCAGCTGT
CCCTGGGTCAAAACGATTT
MXO03846.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:55:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11280-PA | 2214 | trn-RA | 1..565 | 9..573 | 2825 | 100 | Plus |
CG11280-PA | 2214 | trn-RA | 566..860 | 575..869 | 1475 | 100 | Plus |
CG11282-PA | 1623 | caps-RA | 175..248 | 144..217 | 145 | 87.8 | Plus |
CG11282-PB | 1623 | caps-RB | 175..248 | 144..217 | 145 | 87.8 | Plus |
CG11282-PC | 2247 | caps-RC | 175..248 | 144..217 | 145 | 87.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
trn-RB | 3365 | CG11280-RB | 586..1445 | 9..869 | 4280 | 99.9 | Plus |
trn-RA | 3365 | CG11280-RA | 586..1445 | 9..869 | 4280 | 99.9 | Plus |
caps-RE | 4841 | CG11282-RE | 1001..1424 | 83..506 | 545 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13115298..13116157 | 9..869 | 4255 | 99.9 | Plus |
3L | 28110227 | 3L | 13275802..13276225 | 83..506 | 545 | 75.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:19:11 has no hits.
MXO03846.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:55:11 Download gff for
MXO03846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11280-PA | 1..860 | 9..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:49 Download gff for
MXO03846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
trn-RA | 586..1445 | 9..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:01 Download gff for
MXO03846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
trn-RA | 586..1445 | 9..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:01 Download gff for
MXO03846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13115298..13116157 | 9..869 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:49 Download gff for
MXO03846.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13108398..13109257 | 9..869 | 99 | | Plus |