MXO03847.5prime Sequence
807 bp (570 high quality bases) assembled on 2007-07-18
> MXO03847.5prime
CAGTCGACATGGCTGGCCAGCAGCTCGTGGTCTTGATCCCCAAAATAAAT
CCCAACTCCCCGAAGACCCTATACGACCTGTCAGGGCAGGCCCTCATCGG
GAGTATGAACACCAAGATACCGGCGCTGGACAGGATCAGTCGACTGGCTG
AGCTGCCACGCAACTTGCTCATCGATGTTTACGAAATGATGTCACAGCAG
GAGTCCTTGAAGGACACGCTGCTGGAGGAGCTGGCCCAGCTTGAGGTATT
CGCTCGACTCGTTCGCTATCCATTTGCTCGCAGTCAATTGCTGCGCATAA
TGGCCTCACTAATGGCCAGCCAAAAGATGCTGGCCAAAAGACTCAGCGAG
AACTATGTGTCGCGCTATGAGGTGGTGGCCGGTCACGAAGAAGAGGAACT
GGAGTCGAGTATGGATACAGTTGAGGATCGCTCAACGGAGTTCAGTTCAC
TGTATACCTACGATTCCGAATCTACAAATGCAGACAGCATCAGTGATTTT
AATGACGAATTCAGTGCTGATATCGGAAGCATAGTAGGTCTCCCACACCG
GAGAGCAACACAGGAGGAACTCGANTGCGATCAATGATTCTGGCCTCGAG
GAGCTGTCCGCCGTTGAGCTGCAGGTCATAGATCTGGGCCTGCGCCTCGG
ATCGTTCCTCTCGGAGGCTGGATGGATGCAGGAGAGCATTACCGTGCTGG
CATGCCTTAATGTAAGACTGAAGGATCTGCCGACCCACAAACACTGGTTG
CAGTTTCGACTCGACTGCCTGCAGCGCCTTTTGTATGCCGAATCGGCCCA
TTGCAAC
MXO03847.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:55:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10695-PA | 2061 | Pat1-RA | 78..566 | 86..574 | 2445 | 100 | Plus |
| CG10695-PA | 2061 | Pat1-RA | 567..798 | 576..807 | 1160 | 100 | Plus |
| CG10695-PA | 2061 | Pat1-RA | 1..74 | 9..82 | 345 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pat1-RC | 3659 | CG10695-RC | 365..1166 | 5..807 | 3915 | 99.3 | Plus |
| Pat1-RB | 3389 | CG10695-RB | 365..1166 | 5..807 | 3915 | 99.3 | Plus |
| Pat1-RA | 3716 | CG10695-RA | 365..1166 | 5..807 | 3915 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6593360..6593947 | 188..776 | 2895 | 99.8 | Plus |
| X | 23542271 | X | 6591580..6591763 | 5..188 | 845 | 97.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:19:13 has no hits.
MXO03847.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:55:15 Download gff for
MXO03847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10695-PA | 1..798 | 9..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:52 Download gff for
MXO03847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 362..1166 | 1..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:03 Download gff for
MXO03847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pat1-RA | 362..1166 | 1..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:03 Download gff for
MXO03847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6591577..6591763 | 1..188 | 96 | -> | Plus |
| X | 6593361..6593947 | 189..776 | 99 | -> | Plus |
| X | 6594089..6594119 | 777..807 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:52 Download gff for
MXO03847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6485610..6485796 | 1..188 | 96 | -> | Plus |
| arm_X | 6487394..6487980 | 189..776 | 99 | -> | Plus |
| arm_X | 6488122..6488152 | 777..807 | 100 | | Plus |
