MXO03848.5prime Sequence
863 bp (574 high quality bases) assembled on 2007-07-18
> MXO03848.5prime
CAGTCGACATGCGAAGAAGAGGAAGCACTTGCAGCGCACAACAACCACAG
CAGCGGCCACACAAACAGCAGCAGCAGCAGCAGCAGCAAAATCAAAGGTT
AATCCCCGGCCAACGCTGTTCGCTGCTAATGTTGCTAATTGTTGGCCAAG
CAGTTTACGCTTCTGCCGGCAGTGAGATAATCGCAAATCGTTCGGCTTCA
GCTGGCGAATCGTTGATAATGCTGTCGAATTTCACCGTTGCCACGCCGCC
TCCCGCCCCAAGATTCACCAGTCCCTTTCGGGAGCAGGATGTGGCTGAGG
GGGAGGAGTTGGCGGGTGGAGGGCAGGTCGATTGGTTGGACGAGCAGCAT
CCGCTGACCATTTCCCGACCGCCAAGAGCAGGACGCAGCGAGCGGCAGGC
AGAAGAGGATCAGGTGGACCGCTGTCGTCTCTTTGTCGAGGGGGATCCCA
CCAAGAATGAGCTGTACAGCCCCGAGTATCCCAACTTGTATCCGAAGAAC
ATCAACTGCACCCGGGTGATAACAGCGCCAAAGGGACAAATCATACGCCT
GGACTTTCGCAACTCGTTTAATATCGAAGGCCAAGGAGGGGTGCAAATTT
GATTTTCTCGAAATACGAGATGGCCAGTACGGTTTCTCTACGCTGATTGG
CAAGTTCTGCGGCACCGACTTTCCGCCGGAGATCACCTCGAAGGAGCGGT
ATTTGTGGCTTCATTTCCACTCCGACGAGACCATCGAGTACACCGGATTC
AGTGCGGTCTATGAGTATCTGGACAGGAGTCGGGATGCGCCCAGCACCGA
TCTCAACTGCACCATCGATAAGGGCGGCTTCGAGGGCTTCATCAACTCCA
CGGATGTTCGGGC
MXO03848.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:55:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32635-PA | 2034 | CG32635-RA | 1..569 | 9..577 | 2845 | 100 | Plus |
| CG32635-PA | 2034 | CG32635-RA | 569..850 | 578..859 | 1410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Neto-RB | 6903 | CG44328-RB | 597..1450 | 9..863 | 4235 | 99.8 | Plus |
| Neto-RA | 3362 | CG44328-RA | 597..1450 | 9..863 | 4235 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13495840..13496206 | 159..525 | 1835 | 100 | Plus |
| X | 23542271 | X | 13500494..13500744 | 613..863 | 1240 | 99.6 | Plus |
| X | 23542271 | X | 13483136..13483286 | 9..159 | 755 | 100 | Plus |
| X | 23542271 | X | 13499794..13499883 | 522..612 | 405 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:27:30 has no hits.
MXO03848.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:55:20 Download gff for
MXO03848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32635-PA | 1..854 | 9..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:57 Download gff for
MXO03848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neto-RA | 589..1450 | 1..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:04 Download gff for
MXO03848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Neto-RA | 589..1450 | 1..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:04 Download gff for
MXO03848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13500494..13500744 | 613..863 | 99 | | Plus |
| X | 13483128..13483286 | 1..159 | 97 | -> | Plus |
| X | 13495841..13496206 | 160..525 | 100 | -> | Plus |
| X | 13499798..13499883 | 526..612 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:57 Download gff for
MXO03848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13377161..13377319 | 1..159 | 97 | -> | Plus |
| arm_X | 13389874..13390239 | 160..525 | 100 | -> | Plus |
| arm_X | 13393831..13393916 | 526..612 | 98 | -> | Plus |
| arm_X | 13394527..13394777 | 613..863 | 99 | | Plus |
