MXO03849.5prime Sequence
867 bp (818 high quality bases) assembled on 2007-07-18
> MXO03849.5prime
CAGTCGACATGGAGCACGCCGGCGCGCCAATCTCCACGTCCGCCTCGAAC
ATAGCCACCGTGCTGGAGGACGGCGAGAACCAGCAGCTGCCGCCCTTGAC
GGGATCGGGACCTAGTCGCCAGAGATCTCTGAGGGATCGGCTCAAGGACG
GCATCACCGGCAGCTTCTCCTGGCAGAGCAAATCGCGCAGCGTGGATCAC
GGCCTTGCGGCTCCATTCGACTTGGACTCGCTCCGCTCCAAAGTGGAGCA
GCGCTTCGAGAGCGTCGACAAATTATCAAGGCAAAAGTCTTCATTGCCCA
CCATACCCACCATTTCCTACACCGTGGGCAATCGCGACACCCTGACCTCC
GTGGCCGCCCGGTTCGACACCACGCCCTCGGAGCTGACCCACCTCAACCG
GCTGAACAGCTCCTTCATCTATCCGGGCCAGCAGCTGCTGGTGCCGGACA
AGAGCGCCAAGGACGACGCCTCCAGCAGCTCCACCCACGACGCGGACGGT
GCCAGCCTGTCCGGCAAATCGAGTCCGGTCGAGCGCAAGTTGTCCGGCGA
CGAGAGCCGCGAGAAAGACATACTCGAGGGCCTGCGCCCCGGATCCCCAA
AACCGGGACACATCGAGCGCGTGGGCGGCAGTAGCCAGCAGCAGCAGGCG
GAGGAGGAGGCCAACAAAAGCGACGATCCGGTGATCACACAGCGCTTCCT
CAAGATCAATGTGCGCCACATCACGGACGGACAGGGCGTGGTGGGCGGCG
TCCTGCTGGTCACGCCCAACGCCGTTATGTTCGATCCCAACGTCAGCGAT
CCCCTGGTCATCGAGCACGGCCCGGAGAGCTACGGCGTCATTGCGCCCAT
GGAGCTGGTGGTCAACG
MXO03849.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:55:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32464-PD | 2037 | l(3)82Fd-RD | 1..859 | 9..867 | 4295 | 100 | Plus |
| CG32464-PO | 3078 | l(3)82Fd-RO | 108..799 | 176..867 | 3460 | 100 | Plus |
| CG32464-PP | 3945 | l(3)82Fd-RP | 843..1534 | 176..867 | 3460 | 100 | Plus |
| CG32464-PN | 3813 | l(3)82Fd-RN | 843..1534 | 176..867 | 3460 | 100 | Plus |
| CG32464-PG | 3102 | l(3)82Fd-RG | 108..799 | 176..867 | 3460 | 100 | Plus |
| CG32464-PB | 3813 | l(3)82Fd-RB | 843..1534 | 176..867 | 3460 | 100 | Plus |
| CG32464-PJ | 3813 | l(3)82Fd-RJ | 843..1534 | 176..867 | 3460 | 100 | Plus |
| CG32464-PL | 3813 | l(3)82Fd-RL | 843..1534 | 176..867 | 3460 | 100 | Plus |
| CG32464-PK | 3168 | l(3)82Fd-RK | 108..799 | 176..867 | 3460 | 100 | Plus |
| CG32464-PM | 3039 | l(3)82Fd-RM | 172..760 | 279..867 | 2945 | 100 | Plus |
| CG32464-PF | 2610 | l(3)82Fd-RF | 30..331 | 566..867 | 1510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtd-RZ | 3738 | CG32464-RZ | 1592..2451 | 8..867 | 4300 | 100 | Plus |
| mtd-RX | 5976 | CG32464-RX | 1592..2451 | 8..867 | 4300 | 100 | Plus |
| mtd-RW | 6314 | CG32464-RW | 1954..2813 | 8..867 | 4300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5296336..5296637 | 867..566 | 1510 | 100 | Minus |
| 3R | 32079331 | 3R | 5298202..5298489 | 567..280 | 1440 | 100 | Minus |
| 3R | 32079331 | 3R | 5334404..5334572 | 176..8 | 845 | 100 | Minus |
| 3R | 32079331 | 3R | 5299469..5299573 | 280..176 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:45:54 has no hits.
MXO03849.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:55:25 Download gff for
MXO03849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32464-PD | 1..859 | 9..867 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:25 Download gff for
MXO03849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RW | 1946..2813 | 1..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:18 Download gff for
MXO03849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RW | 1946..2813 | 1..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:18 Download gff for
MXO03849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5298202..5298489 | 280..567 | 100 | <- | Minus |
| 3R | 5299470..5299573 | 176..279 | 100 | <- | Minus |
| 3R | 5334405..5334579 | 1..175 | 98 | | Minus |
| 3R | 5296336..5296635 | 568..867 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:25 Download gff for
MXO03849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1122058..1122357 | 568..867 | 100 | <- | Minus |
| arm_3R | 1123924..1124211 | 280..567 | 100 | <- | Minus |
| arm_3R | 1125192..1125295 | 176..279 | 100 | <- | Minus |
| arm_3R | 1160127..1160301 | 1..175 | 98 | | Minus |
