MXO03850.5prime Sequence
869 bp (767 high quality bases) assembled on 2007-07-18
> MXO03850.5prime
CAGTCGACATGCTGCTGGTAGGTCAGCTATTCGGGGCTTCGGCCAACTCC
TGGGCACGCGCCCTCATCATATTCGTACTGGAGGGGATCGGGTTGGTCTA
CGTGTTCGTGGTCAAGCTGACCAATACTCAGGGCCAGCAGGCGGCCGGGG
AGAGTGAGCTGAACGCCCGTCGCATATCACAGGCGCTCCAGATGCTGGAG
CACACGAGACAGCGCAATGAGGAGCTTAAACAGCTCATCGACGAGTTGAT
GAGTGACCAACTGGACAAGCAGAGCGCAATGAAACTGGTGCAAAGGCTGG
AGAACGATGCGCTAAATCCAAAGCTGGCGCCCGAGGTCGCCGGCCCGGAA
CCAGAATCCATGTTCGAGTCCGCCCCCGCTGATCTGCGCGGTTGGAATAA
TGTGGCCGAGGGAGCGCCCAATGATCTGGAGGCCGGTGTTCCGGATCATG
GCGAATTCGAGCCCAGCCTAGAGTACGAGTTCACGCGCAGACGCATCCAG
ACGAACATCGGTGAGATCTGGAATTTCTTCAGCAGTGAACTGGGCAAAGT
GCGTAAGGCAGTGGCCGCCGGCCATGCGAGTGCCGATTTGGAGGAGTCCA
TTAACCAGGTGCTGCTCCAAGGCGCCGAGCACAAGCGCTCCCTGCTGAGC
GATATGGAGCGGATGCGTCAGTCCGATGGCTACGAGGCCTGGCGACACAA
GGAGGCACGGGATTTGAGCGATTTGGTACAGCGGCGCCTGCACCATCTAC
AGAATCCCAGTGATTGCCAGAATGCTCGCAAGCTGGTCTGTAAGCTCAAC
AAGGGCTGTGGCTACGGCTGCCAACTGCAACATGTGGTGTATTGCTTTAT
AGTGGCCTACCCCACCGAA
MXO03850.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:55:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2448-PA | 1860 | FucT6-RA | 77..860 | 85..868 | 3870 | 99.7 | Plus |
| CG2448-PA | 1860 | FucT6-RA | 1..73 | 9..81 | 315 | 97.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FucT6-RA | 2795 | CG2448-RA | 504..1364 | 8..868 | 4200 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11708244..11708796 | 804..252 | 2765 | 100 | Minus |
| X | 23542271 | X | 11709203..11709448 | 253..8 | 1155 | 98 | Minus |
| X | 23542271 | X | 11708071..11708137 | 868..802 | 305 | 97 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:01:43 has no hits.
MXO03850.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:55:30 Download gff for
MXO03850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2448-PA | 1..859 | 9..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:07 Download gff for
MXO03850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucT6-RA | 498..1364 | 1..869 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:16 Download gff for
MXO03850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucT6-RA | 498..1364 | 1..869 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:16 Download gff for
MXO03850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11708070..11708135 | 804..869 | 95 | <- | Minus |
| X | 11708245..11708794 | 254..803 | 100 | <- | Minus |
| X | 11709203..11709454 | 1..253 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:07 Download gff for
MXO03850.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11602103..11602168 | 804..869 | 95 | <- | Minus |
| arm_X | 11602278..11602827 | 254..803 | 100 | <- | Minus |
| arm_X | 11603236..11603487 | 1..253 | 96 | | Minus |
