MXO03853.5prime Sequence
769 bp (573 high quality bases) assembled on 2007-07-18
> MXO03853.5prime
CAGTCGACATGTCCCAGAAATCTTGCGTGGAACTGAACTAAATTCGAAAA
TTGGATGAAAATAGTGCAGCAATGCGAGCTGCACGTGTCCAACAACAGGA
TTAACGATAATGCGGCCAAGAAACCGCCTGTGAAGGAATTCAAGCGCAAT
TGCCCTGCAAAATCGAACAAATTTGTGGAGAGGGAACTCTTCTCGCTCAT
GTGCAACCTGAACAAGATTGAAAAGAAGCAGGTTTTCGTTTCAGATATCC
TGATTAACGCCAGCATGTTCGACGACAAGAAGGAGAGTTTGGCGCGGCCC
TCCGAAAAACGTGTCCGACCACAACACTCTGGTGTACCACAAATTCCTGA
GGACTCGACCCACTAACGATGATGAAGCCCTAAAGCTGAAGGCTGGTGGA
AAATCGAAGGAGAGGCCAGGCACGAAAATCACGGCAGATTGCTTCTTTTC
GCCTCTTCTATTCAAAATCAACAACAAAAGGGAGTGCCTGAAAAAAGTGA
AGCCCATGAAGGGGGAAAATGCTGTCGAAACCAATGGTATCCCACTCGAA
TCCAAGCCAAGTCAGCACAAAAAGCAAGAAAAGTTTCAAGAAATGCATTA
AGTGCGACAAGAAGAAGCTGTACATTAAGAACTATCAGGTGTCCGCCCGG
CGGGAATGCGATCTCCTCTGCTCGTATGATCCCTTGCGTAAAAATAACGC
CGACCTCTTCCAGACCCACAAAGGCACTTCTTACGAGTGCATGTTCAAGA
ACCTCAAATACAACCAGGC
MXO03853.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:55:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3182-PA | 2568 | sei-RA | 291..566 | 301..576 | 1380 | 100 | Plus |
| CG3182-PB | 2568 | sei-RB | 291..566 | 301..576 | 1380 | 100 | Plus |
| CG3182-PA | 2568 | sei-RA | 49..288 | 58..297 | 1100 | 98.3 | Plus |
| CG3182-PB | 2568 | sei-RB | 49..288 | 58..297 | 1100 | 98.3 | Plus |
| CG3182-PA | 2568 | sei-RA | 566..758 | 577..769 | 965 | 100 | Plus |
| CG3182-PB | 2568 | sei-RB | 566..758 | 577..769 | 965 | 100 | Plus |
| CG3182-PA | 2568 | sei-RA | 1..48 | 9..56 | 165 | 93.7 | Plus |
| CG3182-PB | 2568 | sei-RB | 1..48 | 9..56 | 165 | 93.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sei-RC | 3197 | CG3182-RC | 535..1292 | 9..769 | 3595 | 98.4 | Plus |
| sei-RB | 2752 | CG3182-RB | 90..847 | 9..769 | 3595 | 98.4 | Plus |
| sei-RA | 2716 | CG3182-RA | 54..811 | 9..769 | 3595 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24049431..24050188 | 9..769 | 3520 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:37 has no hits.
MXO03853.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:55:42 Download gff for
MXO03853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3182-PB | 1..758 | 9..769 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:38 Download gff for
MXO03853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sei-RA | 54..811 | 9..769 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:01 Download gff for
MXO03853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sei-RA | 54..811 | 9..769 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:01 Download gff for
MXO03853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24049431..24050188 | 9..769 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:38 Download gff for
MXO03853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19936954..19937711 | 9..769 | 98 | | Plus |
