MXO03854.5prime Sequence
894 bp (759 high quality bases) assembled on 2007-07-18
> MXO03854.5prime
CAGTCGACATGAGTGCTTCAGGGAAGAGTCTTCTGGGCCTGTGGCTCTAC
AGGAGTGGCGAACAGGAGTGGGCCGTCAAGCAGGGAAGTCCCTTGCACCA
GCTTAAAAAGGATTCCACCACATCCGGCTCCAGCTCGCATCCAAGTCTCG
GCAGAAACGCCTCCGCTCCGCCGGAGCCGCCAAGGCTGGCCATCGGTGGT
GGTGGTCAGGATAATGGAAGACAGCATTCCCCTGGCGAACGCATCTCCAT
CATTTTCACCCTGCGTAACCAGGTGGGAAACCTGGCCAGAGCCCTCCAGG
TTTTCCAGGAGCTGGGCATCAATGTGCTGCATTTGGAGCTATCGCCGCTT
GAGATGGCCACCAACCAGGCGGATGTCCTCGTGGATGTGGAGTGCGATCA
GCGTCGACTCGACCAGGTGGTCAAGATGCTCAACCGAGAGGTGGCCTCTG
TGAACTACACTTCCGTGAACACGCAGGGATTGGCCAGGGCTCCGTCGCTA
TCGGCGTGCTCCAGTTTTGACTTCGGCGATATGGTGTGGTTTCCGCGAAA
GATTTCCGATTTGGACAAGGCGCAGAATGTGCTCATGTACGGCTCGGAGT
TGGATGCCGACCATCCAGGATTCAAGGACCCCGTGTACCGTAAACGGCGA
GAGCAGTTCTCGGCCATTGCCAACAACTTCAAGCATGGCAACCCCATTCC
ACGTGTGCAATACACACCTGAGGAGGTGAAAACCTGGGGCACCGTTTTCT
TGGAGCTCCACCGCCTCTACGTGTTGCATGCTGTGCCTGAGTACATGGAC
AACTGGCCGGAGCTGGAGAAGTACTGTGGCTACCGCGAGGACAACGTTCC
CCAGTTGCAGGATGTGAGTGTCTATCTCAAGCGCAAGACGGGAT
MXO03854.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:55:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9122-PA | 1668 | Trh-RA | 1..886 | 9..894 | 4405 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trh-RA | 2183 | CG9122-RA | 84..969 | 9..894 | 4415 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1192580..1193090 | 519..9 | 2540 | 99.8 | Minus |
| 3L | 28110227 | 3L | 1192308..1192478 | 685..515 | 840 | 99.4 | Minus |
| 3L | 28110227 | 3L | 1191949..1192107 | 894..736 | 795 | 100 | Minus |
| 3L | 28110227 | 3L | 1192183..1192234 | 737..686 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:03:51 has no hits.
MXO03854.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:55:48 Download gff for
MXO03854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9122-PA | 1..886 | 9..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:42 Download gff for
MXO03854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trh-RA | 79..969 | 1..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:07 Download gff for
MXO03854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trh-RA | 79..969 | 1..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:07 Download gff for
MXO03854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1191949..1192106 | 737..894 | 100 | <- | Minus |
| 3L | 1192184..1192234 | 686..736 | 100 | <- | Minus |
| 3L | 1192308..1192473 | 520..685 | 100 | <- | Minus |
| 3L | 1192580..1193095 | 1..519 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:42 Download gff for
MXO03854.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1191949..1192106 | 737..894 | 100 | <- | Minus |
| arm_3L | 1192184..1192234 | 686..736 | 100 | <- | Minus |
| arm_3L | 1192308..1192473 | 520..685 | 100 | <- | Minus |
| arm_3L | 1192580..1193095 | 1..519 | 99 | | Minus |
