MXO03857.5prime Sequence
866 bp (699 high quality bases) assembled on 2007-07-18
> MXO03857.5prime
CACTCGACATGGAGGTGCAAGTGGGATGGCCAAAGCTGATCAAGATGGGA
GCCCAGTTGGTTGGCCACAAGGTGCAACAGTAGGGGCTCTCCACGGGTCA
CACACTGATTTTGGACACCACGTACGGACAGGTGCGCGGACTCCAAAGGA
AGACGGTCTACCACAAGGAGCCGTACTTTGCCTTCGAGGGCATTCCGTAC
GCCAAGCCCCCCGTGGGTGACCTCCGATTCAGGGCTCCTCAGCCACCGGA
ACCCTGGCAAGGAGTGCTCAACTGCACTACCAATCGATCCAAGCCCATGC
AGAGGAACATGCTCCTGGGAATTGTCGAGGGCAGTGAGGATTGTTTGCAT
TTGAACGTTTATGTCAAAGCCTTGAAGTCGGAAAAACCGCTGCCCGTAAT
TGTGTGGATTTACGGAGGTGGTTTCCAAAAGGGTGAGGCCTCCAGGGATA
TTTACAGTCCGGATTACTTCATGAAGAAGCCAGTGGTATTCGTCGCTATC
AACTACAGGTTGGCAGCACTAGGATTTCTCAATCTAAAGGACCCGAAGCT
GGATGTTCCTGGCAATGCGGGACTTAAGGACCAAGTAATGGCTCTGCGTT
GGATAAGTCAAAACATCGCCCACTTCAATGGCGACCCCAACAACATCACA
TTGATGGGAGAAAGTGCAGGATCAGCTTCTGTCCACGTCATGATGACCAC
AGAACACACACGTGGTCTCTTCCATAAGGCTATCATGCAATCGGGATGTG
CCCTCAGCGAATGGGTGGAGAGTCCGGATAACAATTGAGCATTCCGGCTG
GCCCAGAATCTGGGCTACAAGGGCGACGAGAAAGATGCAGATGTACTAAG
CTTTCTTAGTAAGGTT
MXO03857.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:55:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2505-PA | 1701 | alpha-Est2-RA | 1..858 | 9..866 | 3965 | 98.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est2-RB | 2141 | CG2505-RB | 288..1146 | 8..866 | 4100 | 98.5 | Plus |
| alpha-Est2-RA | 1958 | CG2505-RA | 105..963 | 8..866 | 4100 | 98.5 | Plus |
| alpha-Est1-RA | 2123 | CG1031-RA | 294..925 | 116..747 | 490 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7543037..7543504 | 56..523 | 2265 | 98.9 | Plus |
| 3R | 32079331 | 3R | 7543890..7544235 | 521..866 | 1610 | 97.7 | Plus |
| 3R | 32079331 | 3R | 7546931..7547128 | 747..550 | 375 | 79.3 | Minus |
| 3R | 32079331 | 3R | 7542849..7542898 | 8..57 | 250 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:07:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 588..635 | 602..652 | 113 | 72.5 | Plus |
MXO03857.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:55:52 Download gff for
MXO03857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2505-PA | 1..858 | 9..866 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:58 Download gff for
MXO03857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est2-RA | 105..963 | 8..866 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:54 Download gff for
MXO03857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est2-RA | 105..963 | 8..866 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:54 Download gff for
MXO03857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7542849..7542896 | 8..55 | 100 | -> | Plus |
| 3R | 7543037..7543503 | 56..522 | 98 | -> | Plus |
| 3R | 7543892..7544235 | 523..866 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:58 Download gff for
MXO03857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3368571..3368618 | 8..55 | 100 | -> | Plus |
| arm_3R | 3368759..3369225 | 56..522 | 98 | -> | Plus |
| arm_3R | 3369614..3369957 | 523..866 | 97 | | Plus |
