Clone MXO03860 Report

Search the DGRC for MXO03860

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:38
Well:60
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG15279-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO03860.5prime Sequence

876 bp (813 high quality bases) assembled on 2007-07-18

> MXO03860.5prime
CAGTCGACATGGATACGACAGGAAGGAACCACCAAAATCTAGCCTTCGTG
GGCGACGACGGACGCAGTACGGCCAGCACAGTAGAGATTTCGACCAACAG
TCCAGCCCTGCGAGATAATTCCGATGACCAGGAGGCAGCCAAAGTGCCAG
AGGAGCGTGCCACCTGGGGCAAGGGCGTGGAGTTTCTGATGTCCTGCATC
GCCATGTCCGTGGGTCTGGGAAACGTGTGGCGATTCCCCTTTACTGCCCT
CGATAATGGCGGTGGCGCCTTCCTCATACCATATCTCATTGTCCTGTTCC
TGATTGGCAAACCGATTTACTATCTGGAAATGGTAATTGGCCAGTTTTCC
AGTCGGGGCTCGGTTAAAGTGTTCGATTTGTGCCCGGCGATGAAAGGTGT
TGGAGCTGGCCAGGCTTTCCAGGTGTTCATGCTCAGCACTTACTATGCCG
CCCTGGTAGCGATAATTGGCCGATATTTCATTGAATCATTTCGCAACCCA
TTGCCCTGGTCCACATGCCGTGCGGAATGGGGTATCCACTGCATTAACTC
AGCCCCCGATGCGAGTAATTGGTCTCAACTGGAAAGCAATGATCAGCGCC
CGCAAAATTACACAATGAAATCACAAAACGATCGGGTCATCACCAGTTCG
GAATGGTACTTTGTTAAGGAAGTGCTGCACGAGAAACCAAATATCGAGGA
AGGAATCGGCCTACCAAACTGGGAGTTGGTCATTGGACTTTTTATCGCCT
GGTCCTGTGTGTTTTTCATTATTCGTCGCGGAGTGAAGAGTTCGGGAAAG
GCATCCTACTTCCTGCCCCTTTTCCCGTACGTCATCATGGGTGTTCTTCT
GGTGCGAGCTGTAACTCTCGCCGGGA

MXO03860.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG15279-PB 1920 CG15279-RB 15..860 23..868 4180 99.7 Plus
CG15279-PA 1920 CG15279-RA 15..860 23..868 4180 99.7 Plus
CG15279-PC 2220 CG15279-RC 729..1160 437..868 2135 99.7 Plus
CG15279-PC 2220 CG15279-RC 15..388 23..396 1845 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG15279-RA 2110 CG15279-RA 67..933 9..876 4240 99.3 Plus
CG15279-RB 2531 CG15279-RB 488..1354 9..876 4240 99.3 Plus
CG15279-RD 2513 CG15279-RD 488..893 9..414 1910 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14848672..14848978 398..92 1535 100 Minus
2L 23513712 2L 14846790..14847060 664..394 1355 100 Minus
2L 23513712 2L 14846291..14846494 868..665 1005 99.5 Minus
2L 23513712 2L 14849039..14849122 92..9 360 95.2 Minus
2R 25286936 2R 12300722..12300885 328..165 325 79.9 Minus
3L 28110227 3L 9212982..9213163 178..359 310 78 Plus
2R 25286936 2R 9795678..9795857 180..359 240 75.6 Plus
Blast to na_te.dros performed on 2014-11-28 20:04:05 has no hits.

MXO03860.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:56:02 Download gff for MXO03860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15279-PA 1..866 9..875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:46 Download gff for MXO03860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15279-RB 488..1353 9..875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:12 Download gff for MXO03860.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15279-RB 488..1353 9..875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:12 Download gff for MXO03860.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14846285..14846494 665..875 99 <- Minus
2L 14846790..14847057 397..664 100 <- Minus
2L 14848674..14848977 93..396 100 <- Minus
2L 14849039..14849105 26..92 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:46 Download gff for MXO03860.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14848674..14848977 93..396 100 <- Minus
arm_2L 14849039..14849105 26..92 98 <- Minus
arm_2L 14846285..14846494 665..875 99 <- Minus
arm_2L 14846790..14847057 397..664 100 <- Minus