MXO03860.5prime Sequence
876 bp (813 high quality bases) assembled on 2007-07-18
> MXO03860.5prime
CAGTCGACATGGATACGACAGGAAGGAACCACCAAAATCTAGCCTTCGTG
GGCGACGACGGACGCAGTACGGCCAGCACAGTAGAGATTTCGACCAACAG
TCCAGCCCTGCGAGATAATTCCGATGACCAGGAGGCAGCCAAAGTGCCAG
AGGAGCGTGCCACCTGGGGCAAGGGCGTGGAGTTTCTGATGTCCTGCATC
GCCATGTCCGTGGGTCTGGGAAACGTGTGGCGATTCCCCTTTACTGCCCT
CGATAATGGCGGTGGCGCCTTCCTCATACCATATCTCATTGTCCTGTTCC
TGATTGGCAAACCGATTTACTATCTGGAAATGGTAATTGGCCAGTTTTCC
AGTCGGGGCTCGGTTAAAGTGTTCGATTTGTGCCCGGCGATGAAAGGTGT
TGGAGCTGGCCAGGCTTTCCAGGTGTTCATGCTCAGCACTTACTATGCCG
CCCTGGTAGCGATAATTGGCCGATATTTCATTGAATCATTTCGCAACCCA
TTGCCCTGGTCCACATGCCGTGCGGAATGGGGTATCCACTGCATTAACTC
AGCCCCCGATGCGAGTAATTGGTCTCAACTGGAAAGCAATGATCAGCGCC
CGCAAAATTACACAATGAAATCACAAAACGATCGGGTCATCACCAGTTCG
GAATGGTACTTTGTTAAGGAAGTGCTGCACGAGAAACCAAATATCGAGGA
AGGAATCGGCCTACCAAACTGGGAGTTGGTCATTGGACTTTTTATCGCCT
GGTCCTGTGTGTTTTTCATTATTCGTCGCGGAGTGAAGAGTTCGGGAAAG
GCATCCTACTTCCTGCCCCTTTTCCCGTACGTCATCATGGGTGTTCTTCT
GGTGCGAGCTGTAACTCTCGCCGGGA
MXO03860.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15279-PB | 1920 | CG15279-RB | 15..860 | 23..868 | 4180 | 99.7 | Plus |
CG15279-PA | 1920 | CG15279-RA | 15..860 | 23..868 | 4180 | 99.7 | Plus |
CG15279-PC | 2220 | CG15279-RC | 729..1160 | 437..868 | 2135 | 99.7 | Plus |
CG15279-PC | 2220 | CG15279-RC | 15..388 | 23..396 | 1845 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15279-RA | 2110 | CG15279-RA | 67..933 | 9..876 | 4240 | 99.3 | Plus |
CG15279-RB | 2531 | CG15279-RB | 488..1354 | 9..876 | 4240 | 99.3 | Plus |
CG15279-RD | 2513 | CG15279-RD | 488..893 | 9..414 | 1910 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14848672..14848978 | 398..92 | 1535 | 100 | Minus |
2L | 23513712 | 2L | 14846790..14847060 | 664..394 | 1355 | 100 | Minus |
2L | 23513712 | 2L | 14846291..14846494 | 868..665 | 1005 | 99.5 | Minus |
2L | 23513712 | 2L | 14849039..14849122 | 92..9 | 360 | 95.2 | Minus |
2R | 25286936 | 2R | 12300722..12300885 | 328..165 | 325 | 79.9 | Minus |
3L | 28110227 | 3L | 9212982..9213163 | 178..359 | 310 | 78 | Plus |
2R | 25286936 | 2R | 9795678..9795857 | 180..359 | 240 | 75.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:04:05 has no hits.
MXO03860.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:56:02 Download gff for
MXO03860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15279-PA | 1..866 | 9..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:46 Download gff for
MXO03860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15279-RB | 488..1353 | 9..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:12 Download gff for
MXO03860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15279-RB | 488..1353 | 9..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:12 Download gff for
MXO03860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14846285..14846494 | 665..875 | 99 | <- | Minus |
2L | 14846790..14847057 | 397..664 | 100 | <- | Minus |
2L | 14848674..14848977 | 93..396 | 100 | <- | Minus |
2L | 14849039..14849105 | 26..92 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:46 Download gff for
MXO03860.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14848674..14848977 | 93..396 | 100 | <- | Minus |
arm_2L | 14849039..14849105 | 26..92 | 98 | <- | Minus |
arm_2L | 14846285..14846494 | 665..875 | 99 | <- | Minus |
arm_2L | 14846790..14847057 | 397..664 | 100 | <- | Minus |