MXO03861.5prime Sequence
852 bp (806 high quality bases) assembled on 2007-07-18
> MXO03861.5prime
CAGTCGACATGTCTCGAAAGAAGTGGTCTTCGTTGGACAAACCGCCCCTC
TCAGATGCAGTGCTTCAAGTGGTGCAGAGCTTCGGCTTCCAGCAGATGAC
GCCCGTCCAGACGGCGGCCATACCGCTACTTCTGGCCCGGAAGGATGTCT
CAGCGGAGGCTGTTACTGGTAGTGGTAAAACGCTAGCCTTCCTTGTGCCC
ATGCTAGAAATCCTCCAGAGACGGCACAAGGAGACCCCGTGGGGCCCCAA
GGAAATAGGTGCCCTCGTCATCTCACCAACCCGGGAACTGGCGCGCCAAA
TCTCCGAGGTCCTAGCCCAGTTTTTGGAACACGAAGACTTGGAGCACCTG
AATCAACAGTTGATTGTAGGCGGCAACAGCATTGAAGAGGACATTGCCAC
GCTGCGTAGGGAAACGCCGTGTATACTGGTGTGCACTCCCGGTCGGCTGG
AGGATCTATTTCAGCGCAAAGGAGATGATCTTAATCTGGCGGCTCAAGTG
AAGAGTTTGGAGTTTCTCGTCTTAGACGAAGCTGACCGCCTGTTGGACTT
GGGCTTTAAAACAAGTGTAAATAACATACTGGGGCTATCTGCCCCGCCAA
CGTCGAACTGGGCTCTTTTCCGCCACACAGACTACCGAGGTTACGGACTT
AATCCGTGCGGGGTTGAGAAATCCTGTTCTCGTATCAGTCAAAGAGAAGG
CATCCGTAAACACTCCAGCCCGCCTGCAGAACTTCTACAGGATTGTCGAG
CCAGAACTAAAGTTTGTGGCCCTGCTGGAGTTCCTCAGTTCACCCGCCAC
CGTTATTGGAAAGGTAATGGTCTTTTTCCCCACCTGCGCCTGTGTGGAGT
AT
MXO03861.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:56:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9630-PA | 1842 | CG9630-RA | 1..575 | 9..583 | 2875 | 100 | Plus |
| CG9630-PA | 1842 | CG9630-RA | 573..843 | 582..852 | 1355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9630-RA | 1954 | CG9630-RA | 55..897 | 9..852 | 4195 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8269000..8269842 | 852..9 | 4170 | 99.9 | Minus |
Blast to na_te.dros performed 2014-11-28 20:04:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 6720..6777 | 197..254 | 109 | 69.5 | Plus |
MXO03861.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:56:07 Download gff for
MXO03861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9630-PA | 1..843 | 9..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:52 Download gff for
MXO03861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9630-RA | 49..897 | 1..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:17 Download gff for
MXO03861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9630-RA | 49..897 | 1..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:17 Download gff for
MXO03861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8269000..8269848 | 1..852 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:52 Download gff for
MXO03861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4094722..4095570 | 1..852 | 99 | | Minus |
