MXO03864.5prime Sequence
787 bp (705 high quality bases) assembled on 2007-07-18
> MXO03864.5prime
CAGTCGACATGCAGAAGTCAGCCNNCATCACCCNCCTGTCGGCCGAAAAA
AAGAAAAAGAAAGACGATGAAAAGAAGGACAACAGGGAGGAAGAGTTGCA
NAAAAACAAGGAGCTAAAGTGCGTGAGCAACTACGACAAGACCGAGATAC
TCGACTATATGCCCCGATATATGGATACCTTCTGGAAAATGGACACGCGG
CTGAGCGGATCCAAGGTGGATGGTCTATGGATGCTCAACCAGTCCAACTA
CAACAAGGGACTGGCCTTCACACTGAACGAAAGGCGAGTGCTATCCATTC
ACGGACTACTTCCGGTGGCAGTGCGAACTATAGATGAACAGGCGGAGATC
TGCAGTAATCTCCTCGAGTCATTTACCAATAACGTGCAACAGTATATATA
TCTGACATATCTGTCTCGTCGAAATAGGCGATTATTCTACTACCTTTTGC
TGTCCAATCCCGATCGCTTTGTACCCATGACGGATGCCTCGGGCTCGATA
GATCTGCTAATGGTCCACAGGATGATCCATTCGATGGGCCAGGGTCTTTA
CATTTGCATTAAGGATCTGGGGCACGTTTCGCAAATCCTGTCTAATTGGC
CATTCCGTTGCGTTCGCTGCCTGCTGGTGAGCAATGGTGCCTCTGTTCTG
AGTGTGGGTGACTTGGGTGTCGACGAGATGCCCATACTGTTCTCCAACTT
GCATCAAAATGTCGTCTATGGCGGCATTCATCCGGCTTATTGCTTGGCCG
TAATGCTGGATGTGGGTACCAATAATGAGGAACTGTT
MXO03864.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:56:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7848-PA | 1902 | CG7848-RA | 78..779 | 86..787 | 3441 | 99.5 | Plus |
| CG7848-PA | 1902 | CG7848-RA | 27..74 | 35..82 | 240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:49:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7848-RA | 2103 | CG7848-RA | 157..936 | 8..787 | 3706 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:49:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16435019..16435798 | 787..8 | 3706 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:49:16 has no hits.
MXO03864.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:56:22 Download gff for
MXO03864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7848-PA | 19..779 | 27..787 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:26 Download gff for
MXO03864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7848-RA | 154..936 | 1..787 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:01 Download gff for
MXO03864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7848-RA | 154..936 | 1..787 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:01 Download gff for
MXO03864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16435019..16435774 | 32..787 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:26 Download gff for
MXO03864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12322524..12323279 | 32..787 | 99 | <- | Minus |
