MXO03865.5prime Sequence
854 bp (748 high quality bases) assembled on 2007-07-18
> MXO03865.5prime
CAGTCGACATGTTGCGCAACACGCCTTTCGGTGCCACGCCCACCTACAAA
CTACTTCTGGGCTTCGGACTATGCTCCCTTGGGGGCGCCATGCTATATGC
CTATTTCAAGACTCGAAACGACGAGGAGGAAGCGGACTCAGGTGGCCAAC
GGCCGGCATCCGGGATTAGAGGACAGACAGAGGAACAGAAGCCCCAGAAG
GAAGTGTGCCTCAAAATCGTCGTGGACAACGAGCATGTGCCCCTGATAAT
GGGTCGCGGTGGATCCAATATCAAGTTGATTGAAGAAAAGACCCTGGCCA
AGATAAGATTACGAGACAAAGACAGTGGCCACAAATTCTGCGACATTAGC
GGCGTTCCCGATGCGGTTAAGGCGGCTCGAGCTCTGCTTATCAAGGAAAT
TGAACGTGCGCCCGTGGTGAAAGTGGAACTGCAGGTGCCCCAGAGGCTGG
CCAGCAAAATTAACGGACGCGGCGGCGAGCTCCTCCAGGAGATCCGGAGC
AGTTCGCTAGCCAAGCTGAATATCGATTTAAATGGGCGGAATGGAAAGGC
CAAGATTACGATTATCGGCAATCAAAAGCAAGTGAACATAGCCCGAAAAA
TGCTGGATGATCAGATAGAGGAGGATGAGGAACTCGTGCGGTCCATGGAG
GAGGTGGAACAGCGTCGGGAGCCCCGCAGATCTCCCACCAACAGCATTGC
GTCCAGCATGTACTCCTCCCAGACATCCCTAAGCTCTCACACTCAGCCCA
GAGACAAGCTAATGGCCTCCAAGGGCGAGGGTAAGCCAATGGAGGTTTAT
GTCTCCGCGGTGGCCTCGCCCACTAAATTCTGGGTTCAGCTTATCGGGAC
GCAG
MXO03865.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:56:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7082-PA | 1731 | CG7082-RA | 1..839 | 9..847 | 4195 | 100 | Plus |
| CG7082-PC | 1731 | CG7082-RC | 1..839 | 9..847 | 4195 | 100 | Plus |
| CG7082-PB | 1731 | CG7082-RB | 1..839 | 9..847 | 4195 | 100 | Plus |
| CG7082-PD | 1731 | CG7082-RD | 1..839 | 9..847 | 4195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| papi-RD | 2112 | CG7082-RD | 128..975 | 7..854 | 4210 | 99.8 | Plus |
| papi-RB | 2235 | CG7082-RB | 199..1046 | 7..854 | 4210 | 99.8 | Plus |
| papi-RC | 2331 | CG7082-RC | 295..1142 | 7..854 | 4210 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2223704..2224245 | 313..854 | 2680 | 99.6 | Plus |
| 2L | 23513712 | 2L | 2223327..2223633 | 7..313 | 1535 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:59:06 has no hits.
MXO03865.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:56:28 Download gff for
MXO03865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7082-PD | 1..846 | 9..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:06 Download gff for
MXO03865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| papi-RC | 289..1142 | 1..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:02 Download gff for
MXO03865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| papi-RC | 289..1142 | 1..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:02 Download gff for
MXO03865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2223321..2223633 | 1..313 | 99 | -> | Plus |
| 2L | 2223705..2224245 | 314..854 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:06 Download gff for
MXO03865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2223321..2223633 | 1..313 | 99 | -> | Plus |
| arm_2L | 2223705..2224245 | 314..854 | 99 | | Plus |
