MXO03866.5prime Sequence
873 bp (818 high quality bases) assembled on 2007-07-18
> MXO03866.5prime
CAGTCGACATGTCACATACCAAAGATGCAGAGATGTCCATGCCCGCTCGG
CAGGAATCTGATCGTACATCGGCCCCATCTGTTACTAAATCCCTCACTCT
GAACTCTACTCGGAGCGGGGTGGGCACGGGAAACTTTGGGGGCTACGGCA
TGACGAACGGGGCCGAGAAACCTTCTGTGCTGCACATGATAATGGAAGCC
TTGGGTCTACGCAATCAGGCTCAAAACCGCGAGCCAACATCCAAGGATAT
TGGAACTCTGATAATGCTGGGCGTAATGTTTTTGCTCTTTGTAATCAGCG
TGACCGGATTTTTCGTAATGTGGTTTACCGAATATTACAACAACACCATT
CTGGAGAACCTGATCCTGGCCGAAAACTCGGATACCGCTAATAGTTGGCT
TAACCCTGATCCTAAGTACGACACTTTGCTAAAGGCTCACATTTTTCACT
ACCCCAACATCGATGACTACTTAGCAGGGCGGGCAGATAAAATAAAGGTC
GTGGATGTGGGACCTCTCACCTACCAGGAACACACTGTTAAAGATGAAGT
TTCCTTTAACAAAAATTTCACTGTTAGCTTCAGGGACCGCAAGTCTTATA
AGTTTCTCCCGGAAAAGTCGTCTATTGGGGAACACGAAGTGGTCAGGGTG
CCCAATGTGCCGCTTATCTCTGCCGCCGGACCAGTTAAGCGCATGAAGGC
TTTCGAACGCTTAGCTGTATCCACTTGGATAAAACAATTCAAGGAGCCTC
TCTTTAAGAATCTCACGGTTTCCGAATATCTCTGGGGTTATGAGGACAGC
ATTATCAAGTTAAAATCACTGGGCAGAGGCCGGCGACGGTTTGGTCTTCT
GATGAGCCGCAACGGGACTAGCG
MXO03866.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:56:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3829-PA | 1794 | CG3829-RA | 1..865 | 9..873 | 4325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3829-RB | 2059 | CG3829-RB | 72..936 | 9..873 | 4325 | 100 | Plus |
| CG3829-RA | 3159 | CG3829-RA | 1172..2036 | 9..873 | 4325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24988961..24989234 | 584..857 | 1370 | 100 | Plus |
| 2R | 25286936 | 2R | 24988215..24988470 | 9..264 | 1280 | 100 | Plus |
| 2R | 25286936 | 2R | 24988678..24988908 | 355..585 | 1155 | 100 | Plus |
| 2R | 25286936 | 2R | 24988531..24988622 | 265..356 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:59:15 has no hits.
MXO03866.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:56:32 Download gff for
MXO03866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3829-PA | 1..865 | 9..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:13 Download gff for
MXO03866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3829-RA | 1163..2036 | 1..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:08 Download gff for
MXO03866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3829-RA | 1163..2036 | 1..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:08 Download gff for
MXO03866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24988962..24989234 | 585..857 | 100 | -> | Plus |
| 2R | 24989292..24989307 | 858..873 | 100 | | Plus |
| 2R | 24988206..24988470 | 1..264 | 98 | -> | Plus |
| 2R | 24988531..24988622 | 265..356 | 100 | -> | Plus |
| 2R | 24988680..24988907 | 357..584 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:13 Download gff for
MXO03866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20875729..20875993 | 1..264 | 98 | -> | Plus |
| arm_2R | 20876054..20876145 | 265..356 | 100 | -> | Plus |
| arm_2R | 20876203..20876430 | 357..584 | 100 | -> | Plus |
| arm_2R | 20876485..20876757 | 585..857 | 100 | -> | Plus |
| arm_2R | 20876815..20876830 | 858..873 | 100 | | Plus |
