MXO03868.5prime Sequence
855 bp (825 high quality bases) assembled on 2007-07-18
> MXO03868.5prime
CAGTCGACATGGCCAAGGACTTGAGCACTATGGGATGGGATTATCTGATG
TTTGTACTGTTTATAGCCCTCACCGTTTTGGGCCCGTTGTGGAAACGCAT
TTTTGGCAAAAAGAAGGAGCGCAGCAAGGCCGACTATGTTTTTGCCACCG
GCGGAGTTTCGATAGTGGCAGTCATGATTTCCATTGCCCGAGGAACCTTG
GGAGTGAGATCCGTGCTAGGCTATCCCAGTGAATTGTACTACCGCGGATC
GGCCATGTGGGAGATCATCTACGGCATGATGAGCGCCTATCCCATCGTTT
GCTTCATGTTCGTGCCCGTGTACTTTAATCTGGGCATCACCTCCGTCTAT
CAGTACATCGATCTCAGGTTCAAGAGCCGCACGGTGAGATGCCTGGCATC
GGCGACATATATCGTGCGGCAGATCTGCAACCTTGGCATCACCGTGTACA
CTCCCAGCGTGGCCCTCTCGACGGTGATTGGCATACCCTACTGGGCCTCC
ATTACGGGCATGGCCGTCATTTGCATATTCTTCACCATTATGGGCGGCCT
GAAGGCGGCTATCAACGCGGAACGTCATCCAGACAGTGACCATTCTGGTT
GTCACTGTGGCGGTTTGTATCCAGGGAACTATCTCTACGGGCGGCGTGAA
GAAGGTTTACCAACTAAATCGGGACAATGGACGTCTCAACTTTTGGAACT
TCACGGGCGATATGACTGTCAGAGTGGATACCACATCGGCTTGGCTGGGC
CAACTGTTCATGTCCCTCTCCCAGATCGGCTGTCAGCAGAACTTTATGCA
GCGTTATGTCAGCCTCAAGTCGCTCAAGGCAGTGCGTCGAGTTATGCTGA
CCAAT
MXO03868.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7720-PB | 2046 | CG7720-RB | 1..563 | 9..571 | 2815 | 100 | Plus |
CG7720-PA | 2046 | CG7720-RA | 1..563 | 9..571 | 2815 | 100 | Plus |
CG7720-PB | 2046 | CG7720-RB | 563..846 | 572..855 | 1370 | 99.2 | Plus |
CG7720-PA | 2046 | CG7720-RA | 563..846 | 572..855 | 1370 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7720-RF | 2471 | CG7720-RF | 192..1039 | 7..855 | 4190 | 99.6 | Plus |
CG7720-RE | 2607 | CG7720-RE | 328..1175 | 7..855 | 4190 | 99.6 | Plus |
CG7720-RD | 2758 | CG7720-RD | 479..1326 | 7..855 | 4190 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18768871..18769084 | 220..7 | 1070 | 100 | Minus |
3R | 32079331 | 3R | 18761831..18762008 | 543..366 | 890 | 100 | Minus |
3R | 32079331 | 3R | 18760995..18761155 | 839..679 | 775 | 98.8 | Minus |
3R | 32079331 | 3R | 18768658..18768809 | 369..218 | 760 | 100 | Minus |
3R | 32079331 | 3R | 18761601..18761738 | 680..542 | 645 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:39:58 has no hits.
MXO03868.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:56:44 Download gff for
MXO03868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7720-PA | 1..846 | 9..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:56 Download gff for
MXO03868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7720-RD | 474..1326 | 1..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:07 Download gff for
MXO03868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7720-RD | 474..1326 | 1..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:07 Download gff for
MXO03868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18760995..18761154 | 680..839 | 98 | <- | Minus |
3R | 18761602..18761737 | 543..679 | 99 | <- | Minus |
3R | 18761832..18762006 | 368..542 | 100 | <- | Minus |
3R | 18768660..18768807 | 220..367 | 100 | <- | Minus |
3R | 18768872..18769089 | 1..219 | 99 | | Minus |
3R | 18760902..18760917 | 840..855 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:56 Download gff for
MXO03868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14586624..14586639 | 840..855 | 100 | <- | Minus |
arm_3R | 14586717..14586876 | 680..839 | 98 | <- | Minus |
arm_3R | 14587324..14587459 | 543..679 | 99 | <- | Minus |
arm_3R | 14587554..14587728 | 368..542 | 100 | <- | Minus |
arm_3R | 14594382..14594529 | 220..367 | 100 | <- | Minus |
arm_3R | 14594594..14594811 | 1..219 | 99 | | Minus |