Clone MXO03868 Report

Search the DGRC for MXO03868

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:38
Well:68
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG7720-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO03868.5prime Sequence

855 bp (825 high quality bases) assembled on 2007-07-18

> MXO03868.5prime
CAGTCGACATGGCCAAGGACTTGAGCACTATGGGATGGGATTATCTGATG
TTTGTACTGTTTATAGCCCTCACCGTTTTGGGCCCGTTGTGGAAACGCAT
TTTTGGCAAAAAGAAGGAGCGCAGCAAGGCCGACTATGTTTTTGCCACCG
GCGGAGTTTCGATAGTGGCAGTCATGATTTCCATTGCCCGAGGAACCTTG
GGAGTGAGATCCGTGCTAGGCTATCCCAGTGAATTGTACTACCGCGGATC
GGCCATGTGGGAGATCATCTACGGCATGATGAGCGCCTATCCCATCGTTT
GCTTCATGTTCGTGCCCGTGTACTTTAATCTGGGCATCACCTCCGTCTAT
CAGTACATCGATCTCAGGTTCAAGAGCCGCACGGTGAGATGCCTGGCATC
GGCGACATATATCGTGCGGCAGATCTGCAACCTTGGCATCACCGTGTACA
CTCCCAGCGTGGCCCTCTCGACGGTGATTGGCATACCCTACTGGGCCTCC
ATTACGGGCATGGCCGTCATTTGCATATTCTTCACCATTATGGGCGGCCT
GAAGGCGGCTATCAACGCGGAACGTCATCCAGACAGTGACCATTCTGGTT
GTCACTGTGGCGGTTTGTATCCAGGGAACTATCTCTACGGGCGGCGTGAA
GAAGGTTTACCAACTAAATCGGGACAATGGACGTCTCAACTTTTGGAACT
TCACGGGCGATATGACTGTCAGAGTGGATACCACATCGGCTTGGCTGGGC
CAACTGTTCATGTCCCTCTCCCAGATCGGCTGTCAGCAGAACTTTATGCA
GCGTTATGTCAGCCTCAAGTCGCTCAAGGCAGTGCGTCGAGTTATGCTGA
CCAAT

MXO03868.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7720-PB 2046 CG7720-RB 1..563 9..571 2815 100 Plus
CG7720-PA 2046 CG7720-RA 1..563 9..571 2815 100 Plus
CG7720-PB 2046 CG7720-RB 563..846 572..855 1370 99.2 Plus
CG7720-PA 2046 CG7720-RA 563..846 572..855 1370 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7720-RF 2471 CG7720-RF 192..1039 7..855 4190 99.6 Plus
CG7720-RE 2607 CG7720-RE 328..1175 7..855 4190 99.6 Plus
CG7720-RD 2758 CG7720-RD 479..1326 7..855 4190 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18768871..18769084 220..7 1070 100 Minus
3R 32079331 3R 18761831..18762008 543..366 890 100 Minus
3R 32079331 3R 18760995..18761155 839..679 775 98.8 Minus
3R 32079331 3R 18768658..18768809 369..218 760 100 Minus
3R 32079331 3R 18761601..18761738 680..542 645 99.3 Minus
Blast to na_te.dros performed on 2014-11-28 22:39:58 has no hits.

MXO03868.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:56:44 Download gff for MXO03868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7720-PA 1..846 9..855 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:56 Download gff for MXO03868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7720-RD 474..1326 1..855 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:07 Download gff for MXO03868.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7720-RD 474..1326 1..855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:07 Download gff for MXO03868.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18760995..18761154 680..839 98 <- Minus
3R 18761602..18761737 543..679 99 <- Minus
3R 18761832..18762006 368..542 100 <- Minus
3R 18768660..18768807 220..367 100 <- Minus
3R 18768872..18769089 1..219 99   Minus
3R 18760902..18760917 840..855 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:56 Download gff for MXO03868.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14586624..14586639 840..855 100 <- Minus
arm_3R 14586717..14586876 680..839 98 <- Minus
arm_3R 14587324..14587459 543..679 99 <- Minus
arm_3R 14587554..14587728 368..542 100 <- Minus
arm_3R 14594382..14594529 220..367 100 <- Minus
arm_3R 14594594..14594811 1..219 99   Minus