MXO03869.5prime Sequence
872 bp (810 high quality bases) assembled on 2007-07-18
> MXO03869.5prime
CAGTCGACATGACGCGCGACGGCGAAATTCCAGCTATTTTCAATCCGAAA
AGAGTGCGCACTCCTTCCGTGGTGGTCACCGGCGACTCCTCGACGAATGG
ACCGTACAGCAACAATAGCACCGGCGGGGCGGGAGCCAGCAGCAGCACGG
CAGTGGCCCCCGGTTCGTCTGCCCAAAACGGCGGCAGTGGCAGCGGAGCA
GCGGGCAGCTGCGGGTTCAGCAACGTGCTCACCTCGAGCAATCCGCAAAT
AACCCACCAAGACTCGATATCGTCGAGCCAACAGGACCCCAATGAGGTGG
TCATCATCCCGGCGGACACACCAACGAGCGCACCGGGCAGCCACAATGCG
GCGCACCACTTCGGAGGCGGCGACTCCAGCGACACCCAGACGGAGCAGCA
GCAAGCCAACGGGCACGGCGAGGAGTCCGAGCTTCGCTTCCGAAAGTTGC
AGGCCTGCAAGGAGTCATGCTGCTCCGAACTGGCCCGGAAGATGTACTTC
GGAGTGTGCGTGACCATCCTGATGACCGCGTCGTGGGTGGGGGCCACCCA
CTGCATTAAGTACATGTACAAGTACCGTGCTCCGTACGACGACTTGCTGA
ACGACGACCAGGACACGTCCTCGAGCCGCGCGGACCTGAGCACGGAGCTG
GAGGATATACTGGCCATCAGCGACTCGTCGCTGCACCACGTCGAGGACGC
CACCGAGATGTTCAACATACCACCGCGCCAGCCGGTCTACTTCAGCGCCC
CCTTCTTCGCCGCCTGGTTCTTCACCAACTTCTCGCTGCTCTTCTTCCCC
ATCTACCTGCTGGGTCTGGTCTCCACCCGCAAGTGCGAGAAGCTGAGCGA
CATCCTTGGCGACGTGCTGCGA
MXO03869.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:56:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31203-PA | 1737 | CG31203-RA | 1..864 | 9..872 | 4320 | 100 | Plus |
| CG31203-PD | 1737 | CG31203-RD | 1..864 | 9..872 | 4320 | 100 | Plus |
| CG31203-PE | 1737 | CG31203-RE | 1..864 | 9..872 | 4320 | 100 | Plus |
| CG31203-PB | 1737 | CG31203-RB | 1..864 | 9..872 | 4320 | 100 | Plus |
| CG31203-PC | 1095 | CG31203-RC | 46..222 | 696..872 | 885 | 100 | Plus |
| CG31203-PC | 1095 | CG31203-RC | 1..46 | 9..54 | 230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42322-RN | 3657 | CG42322-RN | 276..1140 | 8..872 | 4325 | 100 | Plus |
| CG42322-RJ | 3627 | CG42322-RJ | 276..1140 | 8..872 | 4325 | 100 | Plus |
| CG42322-RI | 3614 | CG42322-RI | 263..1127 | 8..872 | 4325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20746820..20747303 | 8..491 | 2420 | 100 | Plus |
| 3R | 32079331 | 3R | 20747362..20747744 | 490..872 | 1915 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:59:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 155..200 | 107..152 | 122 | 73.9 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9185..9230 | 107..152 | 122 | 73.9 | Plus |
MXO03869.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:56:50 Download gff for
MXO03869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31203-PB | 1..863 | 9..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:18 Download gff for
MXO03869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42322-RD | 271..1139 | 1..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:11 Download gff for
MXO03869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42322-RI | 258..1126 | 1..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:11 Download gff for
MXO03869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20746815..20747303 | 1..491 | 99 | -> | Plus |
| 3R | 20747364..20747743 | 492..871 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:18 Download gff for
MXO03869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16572537..16573025 | 1..491 | 99 | -> | Plus |
| arm_3R | 16573086..16573465 | 492..871 | 100 | | Plus |
